GO_0000785 | OmnibusX

I. Literature review

Name	chromatin
ID	GO_0000785
collection_id	Cellular component
Alternative ID	GO:0000789, GO:0000790, GO:0005717
Description	The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
Related synonym	chromosome scaffold
Comment	Chromosomes include parts that are not part of the chromatin. Examples include the kinetochore.
External URL
Genes	SOX10 KDM4E THRA FOXO3 ESRRG WDR43 TBR1 PIAS1 TCF4 CHAF1A VRTN GSC2 TLX3 JUND ZC3H6 PRAME AEBP2 HNRNPDL NR2E1 DMRTA1 HNRNPC MEF2A STAG1 TBX3 NFYB PPP4C HNRNPL RARB NFATC1 RHOXF2B ELK3 ZNF711 FOXD2 DRGX PROP1 LHX1 MYT1 HOXC11 HOXB9 MNX1 MLXIP NR1I2 FOXN1 NR2C2 HOXB4 IRF3 TBX19 ZBTB5 RFX7 NAP1L3 ARGFX NKX2-6 SOX18 RORC RUNX2 MACROH2A2 GMEB1 DDX11 FEV HOXA6 ETV5 MYOCD RHOXF2 SUV39H2 KDM1A FOS TIPIN FANCE CHMP2A OVOL3 CEBPB CSRNP2 NR1H3 ERG POU4F2 DPF1 MYCL MAEL HOXC9 ESRRB PPARGC1A EVX1 HOMEZ ELF3 STAG2 MGA AHRR MITF NR5A1 SP4 POU4F3 FOXE1 HNRNPAB TSPY8 E2F8 NR0B1 TSPY2 TBX1 NSD1 NPAS4 MAFF POLA1 KLF8 SPDEF HLCS STAT1 DPF2 TAL1 TGIF1 FOXQ1 KLF12 POU6F2 KLF16 SIM1 ZNF174 NFKB2 E2F7 TGIF2 EMX2 SDR16C5 MEOX2 KLF15 NKX6-3 ETS1 FIGLA CASZ1 HLF MXD4 BHLHE22 ZEB2 LHX9 CHD7 ARRB1 SP2 FOXR2 SREBF1 OLIG2 KAT8 CBX1 HOXC10 NFX1 SCX NPM2 ASCL4 ZHX2 TBX22 VRK1 MSX1 BASP1 FOXP4 FBH1 AKIRIN2 CSNK2B HOXB7 SP8 ONECUT2 FOXP3 TSPYL6 TFAP2D HOXD1 E2F6 RBBP4 TEAD4 SRPK2 SETSIP TAF1 GATA5 HNF4A KLF6 BRD7 KLF11 TCF7 MACROH2A1 HLX FOXJ2 NELFE SMC2 MAD2L2 USF1 SOX17 UBR5 NEUROG2 RBPJL HES3 CSNK2A2 SIX3 ISL1 SMAD5 DUX4L7 E2F2 OSR1 FAAP24 EIF3E LHX8 JARID2 MBD3 NFKB1 NRIP1 NR2C1 DBF4B HMGN3 NR1I3 SMARCE1 ETV7 CAPN2 HES5 HOXA13 SHLD3 TCF21 SMAD3 TAF5 NKX1-2 RORB TFCP2 ENC1 MTA2 EMX1 SPRTN TSPYL5 SMAD9 TBX2 RAN MEIS2 FOXD4L5 ZBED6 OTX2 LBX2 SPIB TP73 MXI1 PINK1 PPP4R2 BICRA PRMT5 MCM7 DFFB NR1D2 NR1H2 UBP1 NKX2-2 FAM47E USF2 HOXA10 BICRAL POU2F2 ONECUT3 ZHX3 TIMELESS ATF3 CEBPG HSFX1 YY2 ZNF396 HOXB2 ESR2 HOXD13 FAM111A GATA4 BATF2 MAFK DBX2 LHX5 ESRRA GABPA NFXL1 IRF2 HMX3 AKIRIN1 NKX2-8 MEF2B RUNX3 MEIS1 HESX1 DUX4L5 ADNP2 ZNF385A UNCX PHOX2B THAP7 FOXO4 OLIG3 NRL DMRT3 BATF MAFB NR1D1 OIP5 ALX3 MYF6 EHMT1 EVX2 PCGF2 FOXR1 PITX2 ST18 JUNB CEBPA FOXD1 XPC KMT2E HMGB2 FOXG1 PARK7 HSF2 NEUROG1 ZNF618 FOXP1 PROX1 HMGN2 ELF1 FOSB POU5F1B PITX3 BMAL1 CITED2 OBI1 MSX2 ATOH7 BSX DDIT3 NHLH1 TAL2 ATF6B HEYL SATB2 HOXA9 NANOG FOXI1 PRRX1 RPA2 FOXI2 SHLD1 FOXL1 EBF2 HPF1 ZMIZ1 CIC PRRX2 BARX1 CDX4 CCND2 TWIST1 ZNF580 STAT2 IRF7 FAM111B BANF1 ETS2 ELK1 MXD3 ZMYND8 HEY2 NKX1-1 CREB3L1 HDAC4 RCC1 SS18 RFX5 RAX2 ANKRD17 KLF1 PPARG HES2 GMEB2 TFEC FOXN4 DDB2 EHMT2 PBX3 ATF6 PDS5B FOXA1 HBP1 KLF9 ZNF827 ZBTB33 HES6 SMAD2 TLX1 ASCL5 BHLHE23 MBD2 SATB1 FANK1 BATF3 E2F4 IST1 POU3F3 TSPY26P MKX MEOX1 FOXD4L3 TP53 HMX2 FOXB2 OLIG1 PTF1A CHD3 VSX2 MYT1L HOXA7 ACTB EP300 HNF1A NACC2 BARHL2 TBX20 HMGN5 NUCKS1 HR KDM3A SOX12 POU3F4 FOXE3 GBX1 BCL7A KAT6A DVL3 PHF10 CDK4 H1-3 PBX2 FAAP20 TBX5 BACH2 ATOH8 LEF1 TSPY1 TEF TLX2 ALX1 GRHL3 BRD2 SIX6 NEUROD2 HOXB8 NFYA MEF2C CENPS ELF5 KDM5A DBX1 CHMP7 RXRG NOBOX EGR4 NEUROG3 GBX2 ETV6 SMARCD1 SIX5 PCNA ZMIZ2 KDM5B ASF1B HOXC6 GRHL1 TSPY10 STAG3 TRIM33 BUD31 VSX1 KDM4D TFDP3 SIN3A EGR3 HNF4G CSRNP1 MUC1 RB1 NEDD4 HSFY1 ASCL2 SCRT2 TCF7L2 ZBED2 TBX4 NFE2 HOXD9 FOXD4L6 TRPS1 VENTX MAGED1 NCOA1 MSH6 NEUROD4 KLF13 FAAP100 DMRTC1 ZBED1 CHD4 SOX5 BHLHE40 TEAD2 SOX2 FANCA KMT5A MYF5 TFDP2 FANCI CEBPD NFE2L3 NR3C2 SNAI2 LMX1B H1-5 CREB3L4 ZFPM1 THRB DLX2 CREB1 NFATC4 SIRT6 RAD51 PPP1R10 NR4A2 MIXL1 CUX2 FOSL2 DSCC1 NCOR1 ETV3 NKX3-2 MYOG CBX8 ZBED4 BMAL2 CREB5 HOXD3 APTX SPIC H1-7 SOHLH1 RFX2 HES1 NCOR2 DMRTB1 SIN3B MED1 ATF5 PAX1 KIF22 PRKAA1 HEY1 AKAP8L NCOA3 SETD5 PARP1 SMARCA2 ZBTB37 TCF12 SMARCA4 CCAR2 NPAS2 PGR PHOX2A RXRB CHD6 TGIF2LX PIAS2 TBX21 ARID1A NKX6-1 DUX4L3 RARA WAPL PBRM1 BAZ2B RFX3 HOXA2 E2F3 FOXD4 PKNOX1 POU1F1 PDX1 FOXM1 MYC NR1H4 HAND1 PRDM10 ASF1A CDK2AP1 H1-1 SOX3 BPTF SOX4 TSHZ3 TCF7L1 HIF1A NAP1L2 BRD9 DUXA SIRT1 TSHZ1 POU6F1 FOXD4L4 ISX TSPYL4 SMARCD2 LHX2 SETD3 SREBF2 JMJD1C USP44 ATOH1 MORC3 RAD21 HOXA1 DUX4L4 AR BARHL1 PPP4R3B NKX2-4 POGZ HOXA4 GCM2 SPIN4 TOX4 HIRA HSF1 DMRTA2 ORC3 ATF2 STAT3 HELT ETV1 TSPY3 GSC ZNF705A IRX1 MEIS3 MAU2 ESR1 RBL2 CREBBP KDM4B EN2 RHNO1 PPARD NFATC2 ZSCAN1 FOXD3 TBX18 POU3F1 IRX4 CREBL2 HTRA2 FOXJ1 DFFA KAT5 DBP MESP1 HMGN1 ACTL6A KLF14 ZHX1 HOXD12 AHR POU3F2 ASCL3 KDM3B TSHZ2 STAT5A LEMD2 SMAD1 POU2F3 BARX2 MXD1 TCFL5 PDS5A MLX NEUROD1 MLXIPL DMRT1 LYL1 SPI1 FOSL1 EBF4 RUNX1 HAT1 TFAP2A SIX4 ZEB1 PLK1 ZC3H8 DDX23 BHLHE41 EOMES MEF2D NCOA2 MCM2 TBP CENPF NAP1L1 HMGN4 SHOX FLI1 EPAS1 CREB3L3 TCF23 HDAC2 ZFY SP9 GLYR1 NR2F6 CREM ARID2 HES7 DMBX1 TP63 PLCB1 ELK4 DLX5 ZFHX3 ALX4 IRX3 MYOD1 ESCO1 SIRT7 HIC1 ISL2 ESCO2 NEUROD6 SP5 NPAS3 COPS9 NFIL3 COPS5 REL BCL7C CBX6 JUN PAX3 SMCR8 IRX6 H1-0 TFE3 PLK2 TSPYL2 SFPQ DLX4 L3MBTL1 LBX1 SP3 TRIM66 VDR PAX5 HOXD8 SOX11 MIS18A DUX4L2 FANCC KLF2 ZFHX4 IRF6 FOXK1 EGR1 KLF10 STAT5B RORA SP7 PBX1 SP6 FIZ1 CLOCK TGM2 FOXB1 KLF4 VAX1 TARDBP GSX2 ZBED3 RHOXF1 ZFP42 HSF4 HHEX ERF UBE2B HOXD10 CALCOCO1 DMRTC2 RAX HDX FER ESX1 TEAD3 SET RFX4 SMAD6 KLF5 KDM4F MAFA HNRNPD FOXF2 PROX2 NR6A1 ANKRD31 ZBTB34 POU2F1 DLX3 ATF1 GATA1 BACH1 LEUTX ELF4 UBE2A WBP2 MSGN1 NHLH2 NKX2-1 SMARCD3 HOXD11 SMAD4 HAND2 PBXIP1 PBX4 IRF9 POU5F2 OTX1 TRIM24 RARG LOXL2 FERD3L TSPYL1 SOX7 RAD51AP1 HOXB13 ARK2N ZBTB32 EBF3 FOXF1 HOXB6 TPRX1 NR4A1 HDAC1 PAX7 TFAP4 EN1 HOXA3 PITX1 ZFX TFAP2B FOXD4L1 MSC DLX1 NFIB GATA3 FOXN3 MAX NKX2-3 DPF3 SHOX2 PAX9 SMARCB1 KLF3 DPRX HNF1B EZH2 RXRA BRD3 BBX CDCA5 VAX2 HNRNPK NFIA ORC5 NR0B2 UBR2 ARID1B SIM2 SMC3 LHX4 TBX6 AHCTF1 THAP11 FOXH1 TFCP2L1 TAF4 TCF3 HOXC8 NSD3 ZNF740 KDM5C KAT7 KDM5D EGR2 FOXS1 CREB3L2 TSPY4 FOXO6 NASP CBX7 PPARA FOXC1 PAX6 ELF2 UHRF1 CREBZF PARPBP NFAT5 FANCL CHD5 LDB1 RELA CBX3 LMX1A HIF3A SMARCC1 IRX5 SLF2 JDP2 ARX DEAF1 SOX6 ZBTB43 EHF XRCC1 SOX15 KAT6B NFE2L1 NAP1L4 POU4F1 FANCB ARNT KDM4A CHD1 MAF STAT4 HOXB5 TCF15 LHX3 CENPX CRX HOXB1 CREB3 HOXC5 NSD2 STAT6 IRF4 ATF4 PAWR KDM4C ZNF487 NKX6-2 ZFHX2 HOXD4 ZBTB8B SRPK1 MBD1 FOXP2 IRF8 CUX1 ZNF446 RFX8 FOXL2 FOXN2 FOXA2 OTP YY1 HOXB3 ONECUT1 SOHLH2 RIF1 NR4A3 NOTO EBF1 NFIC ATF7 USP3 SOX21 SP1 PAX8 RFX6 TGIF2LY SMARCC2 FOXC2 ZBTB46 MNT FANCG SOX9 TBX15 BHLHA15 NMNAT1 FANCF IRF1 LHX6 FOXJ3 RBL1 GATA6 GSX1 HSFX3 FOXK2 FOXA3 BNC2 TBX10 NKX2-5 MSL2 SOX30 SIX2 CHEK1 SRF IRF5 BHLHA9 PRKDC CDX2 CEBPE TFAP2E SMAD7 ZBTB22 RELB CAMTA2 MEN1 ZFPM2 SRY THAP5 TFAP2C HOXC13 NFIX TFEB WDR82 IPO4 PIAS4 ASCL1 TEAD1 HMBOX1 GCM1 SOX13 NIPBL DMRT2 TMPO IRX2 RFX1 ARNT2 CDX1 SETD1A NR5A2 GATAD2B FOXO1 ACTL6B HOXA5 KLHDC3 E2F1 GRHL2 MTBP SIX1 MESP2 HOPX PAX2 DUX4L6 ETV4 SOX8 SLX4 FANCM TSPY9 SHLD2 CHD8 NFE2L2 TBXT CHD2 BCL7B NFYC KLF7 DLX6 SOX14 KLF17 SOX1 NPAS1 NKX3-1 HES4 HOXC4 FANCD2 HMX1 TFDP1 RBPJ E2F5 CSRNP3 ADNP THAP1 UPF1 PAX4 ZGPAT NR3C1 NFATC3 MYCN PIAS3 CHAF1B

chromatin

I. Literature review