Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 2766.81 | 180 / 180 | 100% | 79.33 | 430 / 430 |
uterus | 100% | 2149.31 | 170 / 170 | 100% | 149.24 | 459 / 459 |
brain | 100% | 2159.82 | 2638 / 2642 | 100% | 117.91 | 705 / 705 |
thymus | 100% | 2479.66 | 653 / 653 | 100% | 133.92 | 604 / 605 |
prostate | 100% | 1814.82 | 245 / 245 | 100% | 74.64 | 501 / 502 |
breast | 100% | 2287.33 | 459 / 459 | 100% | 94.27 | 1115 / 1118 |
stomach | 100% | 1425.55 | 358 / 359 | 100% | 60.56 | 286 / 286 |
lung | 100% | 1887.45 | 576 / 578 | 100% | 80.09 | 1155 / 1155 |
skin | 100% | 2180.68 | 1809 / 1809 | 100% | 94.39 | 470 / 472 |
intestine | 100% | 1787.71 | 966 / 966 | 99% | 69.78 | 524 / 527 |
esophagus | 100% | 1666.91 | 1444 / 1445 | 99% | 50.46 | 182 / 183 |
bladder | 100% | 2113.90 | 21 / 21 | 99% | 85.34 | 500 / 504 |
kidney | 100% | 1648.27 | 89 / 89 | 98% | 69.46 | 885 / 901 |
adrenal gland | 99% | 1759.14 | 256 / 258 | 97% | 56.48 | 224 / 230 |
pancreas | 97% | 863.23 | 318 / 328 | 99% | 69.86 | 176 / 178 |
liver | 100% | 935.91 | 225 / 226 | 96% | 37.83 | 390 / 406 |
adipose | 100% | 2156.63 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 143.56 | 29 / 29 |
muscle | 100% | 3182.80 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3135.82 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 167.95 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 52.32 | 1 / 1 |
blood vessel | 100% | 1889.89 | 1333 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 3086.16 | 922 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 58.40 | 78 / 80 |
heart | 97% | 1412.54 | 836 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0034502 | Biological process | protein localization to chromosome |
GO_0010569 | Biological process | regulation of double-strand break repair via homologous recombination |
GO_0006289 | Biological process | nucleotide-excision repair |
GO_0006260 | Biological process | DNA replication |
GO_0000724 | Biological process | double-strand break repair via homologous recombination |
GO_0000723 | Biological process | telomere maintenance |
GO_0031571 | Biological process | mitotic G1 DNA damage checkpoint signaling |
GO_2000001 | Biological process | regulation of DNA damage checkpoint |
GO_0006284 | Biological process | base-excision repair |
GO_0006298 | Biological process | mismatch repair |
GO_0005654 | Cellular component | nucleoplasm |
GO_0016604 | Cellular component | nuclear body |
GO_0016605 | Cellular component | PML body |
GO_0000781 | Cellular component | chromosome, telomeric region |
GO_0005662 | Cellular component | DNA replication factor A complex |
GO_0000785 | Cellular component | chromatin |
GO_0035861 | Cellular component | site of double-strand break |
GO_0005634 | Cellular component | nucleus |
GO_0019899 | Molecular function | enzyme binding |
GO_0019903 | Molecular function | protein phosphatase binding |
GO_0003697 | Molecular function | single-stranded DNA binding |
GO_0042162 | Molecular function | telomeric DNA binding |
GO_0031625 | Molecular function | ubiquitin protein ligase binding |
GO_0098505 | Molecular function | G-rich strand telomeric DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003684 | Molecular function | damaged DNA binding |
Gene name | RPA2 |
Protein name | Replication protein A2 Replication protein A 32 kDa subunit (RP-A p32) (Replication factor A protein 2) (RF-A protein 2) (Replication protein A 34 kDa subunit) (RP-A p34) |
Synonyms | REPA2 RPA34 RPA32 |
Description | FUNCTION: As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. In the cellular response to DNA damage, the RPA complex controls DNA repair and DNA damage checkpoint activation. Through recruitment of ATRIP activates the ATR kinase a master regulator of the DNA damage response. It is required for the recruitment of the DNA double-strand break repair factors RAD51 and RAD52 to chromatin in response to DNA damage. Also recruits to sites of DNA damage proteins like XPA and XPG that are involved in nucleotide excision repair and is required for this mechanism of DNA repair. Also plays a role in base excision repair (BER) probably through interaction with UNG. Also recruits SMARCAL1/HARP, which is involved in replication fork restart, to sites of DNA damage. May also play a role in telomere maintenance. . |
Accessions | ENST00000444045.1 ENST00000373909.7 [P15927-2] ENST00000419958.5 ENST00000373912.8 [P15927-1] ENST00000313433.11 [P15927-3] P15927 Q5TEJ7 Q5TEJ0 |