Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 16 studies | 66% ± 17% | |
oligodendrocyte precursor cell | 8 studies | 23% ± 4% | |
GABAergic neuron | 6 studies | 24% ± 8% | |
glutamatergic neuron | 5 studies | 32% ± 12% | |
interneuron | 4 studies | 25% ± 8% | |
ependymal cell | 3 studies | 64% ± 15% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 7 studies | 26% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 97% | 2025.86 | 2574 / 2642 | 99% | 44.26 | 698 / 705 |
tonsil | 0% | 0 | 0 / 0 | 2% | 0.21 | 1 / 45 |
prostate | 1% | 7.76 | 3 / 245 | 1% | 0.02 | 3 / 502 |
ovary | 0% | 0 | 0 / 180 | 1% | 0.06 | 5 / 430 |
lung | 0% | 0.48 | 1 / 578 | 1% | 0.09 | 11 / 1155 |
stomach | 0% | 0 | 0 / 359 | 1% | 0.07 | 3 / 286 |
breast | 1% | 2.85 | 3 / 459 | 0% | 0.03 | 4 / 1118 |
skin | 0% | 0.35 | 2 / 1809 | 1% | 0.04 | 3 / 472 |
uterus | 0% | 0 | 0 / 170 | 1% | 0.04 | 3 / 459 |
adrenal gland | 0% | 1.01 | 1 / 258 | 0% | 0 | 0 / 230 |
muscle | 0% | 0.94 | 2 / 803 | 0% | 0 | 0 / 0 |
liver | 0% | 0 | 0 / 226 | 0% | 0.01 | 1 / 406 |
thymus | 0% | 1.00 | 1 / 653 | 0% | 0 | 0 / 605 |
kidney | 0% | 0 | 0 / 89 | 0% | 0.01 | 1 / 901 |
esophagus | 0% | 0.75 | 1 / 1445 | 0% | 0 | 0 / 183 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
adipose | 0% | 0 | 0 / 1204 | 0% | 0 | 0 / 0 |
bladder | 0% | 0 | 0 / 21 | 0% | 0 | 0 / 504 |
blood vessel | 0% | 0 | 0 / 1335 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
intestine | 0% | 0 | 0 / 966 | 0% | 0 | 0 / 527 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
pancreas | 0% | 0 | 0 / 328 | 0% | 0 | 0 / 178 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0060271 | Biological process | cilium assembly |
GO_0070613 | Biological process | regulation of protein processing |
GO_0045879 | Biological process | negative regulation of smoothened signaling pathway |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0021537 | Biological process | telencephalon development |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | RFX4 |
Protein name | Regulatory factor X4 Transcription factor RFX4 (Regulatory factor X 4) (Testis development protein NYD-SP10) Regulatory factor X4 (cDNA FLJ61497, highly similar to Homo sapiens regulatory factor X 4, transcript variant 2, mRNA) |
Synonyms | |
Description | FUNCTION: Transcription factor that plays a role in early brain development. May activate transcription by interacting directly with the X-box. May activate transcription from CX3CL1 promoter through the X-box during brain development. May be required for neural tube ciliogenesis during embryogenesis (By similarity). . |
Accessions | ENST00000546882.5 Q33E94 F8VRD4 ENST00000552917.1 F8W1T9 ENST00000549040.5 B4DZB7 ENST00000539967.6 ENST00000392842.6 [Q33E94-1] ENST00000551640.5 R4GMS3 ENST00000229387.6 [Q33E94-3] F8VX50 ENST00000357881.8 [Q33E94-2] ENST00000536722.5 F8VZC4 |