RNA polymerase II cis-regulatory region sequence-specific DNA binding

I. Literature review

[source]
NameRNA polymerase II cis-regulatory region sequence-specific DNA binding
IDGO_0000978
collection_id

Molecular function

Alternative ID

GO:0000980

Description

Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II.

Related synonym

RNA polymerase II core promoter proximal region sequence-specific DNA binding, RNA polymerase II distal enhancer sequence-specific DNA binding, RNA polymerase II promoter proximal region sequence-specific DNA binding, RNA polymerase II proximal promoter sequence-specific DNA binding, RNA polymerase II upstream activating sequence (UAS) sequence-specific DNA binding

Comment

Note that the phrase "upstream activating sequence", or UAS is often used in S. cerevisiae literature to refer to cis-regulatory sequences. In bacteria such as E. coli, the phrase "upstream activating sequence", or UAS is usually a synonym for "enhancer".

External URL
Genes
SOX10PRDM4FOXO3THRAZNF569ZNF268ZNF670TCF4FOXL3KDM6AIKZF2ZNF583TBR1GATA2ZNF792GSC2ZNF564TLX3JUNDNR2E1DMRTA1ZNF286BZNF662ZNF736MEF2AKLF18PKNOX2ZNF354CTBX3NFYBZNF131NANOGP8RARBNFATC1ELK3ZNF711ZNF876PFOXD2ZNF536ZNF853ZNF181PROP1ZNF735HOXC11HOXB9MLXIPNR1I2foxo3-myc_humanCTCFNR2C2IRF3ZNF138ZSCAN30HOXB4TBX19ZNF202ZNF484ZNF578ZNF140HMGA1RFX7ARGFXNKX2-6SOX18RORCGMEB1RUNX2max-mga_humanZNF708ZNF296FEVPASD1ZNF408ZNF219HOXA6ZNF691FOSE4F1ZNF665ZNF215CTCFLSMYD3OVOL3ZNF718CEBPBZNF776ZNF660NR1H3ERGZNF695POU4F2MYCLHOXC9ESRRBSNAI1ZNF18EVX1ZBTB45ELF3ZNF34MGAPOU4F3MITFNR5A1SP4FOXE1ZNF251ZSCAN5BE2F8TBX1NSD1ZNF710ZNF568MAZNPAS4ZIM3ZNF384MAFFZNF639KLF8NLRC5STAT1KLF12TGIF1FOXQ1TAL1KLF16POU6F2ZNF174NFKB2E2F7TGIF2LRRFIP1KLF15MEOX2ZNF467NKX6-3ETS1ZNF197EMX2ZNF586CHD7MXD4ZEB2HLFSP2ZNF726ZNF616PATZ1THRAP3SREBF1ZNF574HOXC10ZNF479CC2D1BGLIS2CIARTTBX22FOXP4GLI3ZNF829SKOR2HOXB7SP8ONECUT2FOXP3HOXD1SARS1RBBP4E2F6TEAD4DDNZBTB48ZNF461ZBTB16GATA5KLF6HNF4AZNF628TCF7ZNF468ZNF85FOXJ2ZNF717ZNF254KLF11USF1ZNF275SOX17RBPJLZNF121ZNF750HES3NR2E3ZNF43SIX3ISL1SMAD5E2F2ZNF91NTN1NFKB1ZNF283NRIP1NR2C1NR1I3ZNF784ZNF7HES5HOXA13SLC2A4RGZNF423SMAD3NKX1-2ZNF229RORBPRDM15TFCP2ZBTB2EMX1SMAD9ZNF226TBX2ZNF668MEIS2ZFP14FOXD4L5RBAKMYCLP1ZNF137POTX2ZNF850ZBTB7BSPIBBCL6BTP73MXI1SALL4MYCNMED12NR2F2NR1D2ZNF208mxd3-max_humanNR1H2UBP1ZBTB7CZNF239GTF2IRD1ZNF358NKX2-2BCL6HOXA10USF2ZNF540ZNF333ZNF366POU2F2ZNF225ONECUT3ZNF354AATF3CEBPGZNF273ZNF71ZNF93ZNF322RBMXFOXO3BYY2ZNF396ZNF454ESR2HSFX1H2AZ1HOXD13GATA4BATF2MAFKZNF808GABPAZNF624ZNF835IRF2ZNF395NKX2-8MEF2BHESX1MEIS1ZBTB49KDM6BZNF320RUNX3CPHXL2PHOX2BINSM2FOXO4NRLZNF362DMRT3HDGFBCL11BBATFMAFBNR1D1MYF6ZNF253EVX2mad1-max_humanPITX2STK16ZNF772ST18APPFOXD1JUNBZNF671PRDM16ZNF732CEBPAIKZF4ZNF606ZNF680MAFGZNF501ZNF217ZSCAN12HSF2ZNF658BSKILZSCAN10ZNF790FOXP1PROX1MEIS3P2ELF1FOSBPOU5F1BPITX3BMAL1ZNF546MYBL2ZNF648ZNF723ZKSCAN3MSX2ATF6BDDIT3HEYLNHLH1ZNF534TAL2BSXSATB2HOXA9NANOGFOXI1PRRX1FOXI2ZNF345EBF2FOXL1ZNF496ZNF302ZNF547ZNF644MYBIKZF1ZNF544ZNF175ZNF865ZNF267PRRX2SCRT1DHX9ZNF66CDX4ZNF580SALL3ZNF445ZNF626STAT2IRF7ETS2ELK1mnt-mlx_humanMXD3ZNF883HEY2NKX1-1ZNF221ZNF575HDAC4ZBTB1ZNF117ZNF460ZSCAN22SALL1rfx_humanRFX5RAX2ZIC1KLF1ZNF277PPARGZNF311HES2ZNF490GMEB2TFECZNF480PBX3ATF6FOXA1HBP1KLF9ZBTB33NTN3HES6ZNF483ZNF746SMAD2TLX1ZNF286AZNF257ZNF227MYPOPSATB1ZNF704BATF3MYBL1E2F4ZNF572SALL2POU3F3ZNF805MKXMEOX1FOXD4L3TP53DACH2FOXB2CCAR1HOXA7ZNF516ZSCAN29ZNF189ZNF600HNF1ANACC2TBX20OGG1POU3F4ZNF83FOXE3SOX12ZNF334GLI1ZNF605ZNF689ZNF521BACH2TBX5LEF1ZNF280BZNF552PBX2ZNF880TEFTLX2ZNF416GRHL3SIX6HDAC5mxd4-mlx_humanZNF81NFYAZNF716MEF2CZNF836NOBOXNEUROG3GLI4ZNF12EGR4ZNF17ZNF274ZIC2ETV6SIX5HOXC6GRHL1ZFP62ZNF611ZIC5HNF4GEGR3ZNF367ZNF132MTF1ZNF470MUC1SCRT2ASCL2HSFY1TCF7L2ZNF354BZNF816TBX4NFE2ZNF256FOXD4L6IKZF3VENTXZBTB6HOXD9ZNF630ZNF8KLF13ZFP82HIVEP3ZBED1DMRTC1ZNF30SOX5BHLHE40ZKSCAN7TEAD2ZNF722SOX2GFI1LOC122539214MYF5CEBPDNFE2L3ZNF90ZNF681SNAI2CREB3L4THRBNFATC4CREB1RUVBL2DLX2RESTMIXL1NR4A2RFX6CUX2ZNF527SNAPC4ZNF75CPFOSL2TOP1ZIC4NKX3-2ZNF211ZNF646MYOGmlxipl-mlx_humanBMAL2ZNF195ZSCAN18HOXD3ZNF260SPICZNF486NRF1ZNF281RFX2CC2D1AZBTB20DMRTB1ZNF280CGZF1SKOR1ZNF213ZNF587MED1ZNF724NFKBIZETV2FEZF2PAX1HIVEP2HEY1ZBTB37ZNF766TCF12ZKSCAN8NPAS2PGRZNF300ZNF2TGIF2LXXBP1TBX21ZNF506ZBTB4RARANKX6-1ZNF287ZSCAN25DUX4RFX3HOXA2E2F3CPHXLZNF707FOXD4PKNOX1TET1PDX1POU1F1MYCNR1H4HAND1ZNF304ZNF331ZNF629SOX3BPTFSOX4TCF7L1ZNF430HIF1AZNF432ZNF571SUZ12SIRT1ZNF37APOU6F1FOXD4L4ZNF667FEZF1ZNF676ZKSCAN5LHX2ZNF134OVOL1ZNF562PRDM5SREBF2YAP1ZNF26HOXA1ARRREB1NKX2-4CDK9ZNF100SAFBHOXA4ZSCAN26MED8GCM2HSF1DMRTA2ZBTB26ZNF33AZNF729ATF2STAT3HELTETV1ZNF500UTYZNF623MEIS3GSCIRX1ESR1ZNF212ZFP30GFI1BZNF485ZNF727ZNF780BEN2ZNF444nkx2-5_humanPPARDNFATC2ZSCAN1FOXD3ZNF136TBX18ZNF585APOU3F1IRX4DHX36ZNF551ZNF41FOXJ1ZSCAN5DPDBPMESP1ZNF597KLF14ZNF726P1THAP10ZNF24ZNF157POU3F2WIZSNAPC3STAT5AZNF250SMAD1ZNF814POU2F3ZNF347MXD1TCFL5ZNF16MLXZNF782MLXIPLDMRT1SPI1LYL1FOSL1EBF4RUNX1ZNF160ZNF530ZNF737ZNF355PTFAP2AZNF224SIX4ZEB1mnt-max_humanBHLHE41EOMESZBTB39ZNF341ZFP2MEF2DZNF525NCOA2ZNF699TBPZSCAN32ZNF420ZFP1ZNF431FLI1EPAS1HSF5CREB3L3ZFYSP9CREMNR2F6HES7SKITP63ELK4DLX5ZFHX3ZNF565IRX3MYOD1ZNF84ZNF148ZIC3ZNF135ZNF28ZNF697ZNF32SP5NFIL3RELZNF493JUNZNF524PAX3ZBTB17IRX6POU5F1ZNF852BCL11ATFE3ZNF92DLX4SP3VDRPAX5KCNIP3SOX11CARFZNF841KLF2ZNF426ZFHX4IRF6FOXK1EGR1ZNF263ZNF74KLF10ZNF621ZSCAN5ASTAT5BRORAZNF770SP7SP6PBX1FOXB1CLOCKZNF549TARDBPKLF4VAX1SNAI3PLAGL1HIVEP1ZFP42INSM1HHEXHSF4ZBTB8ACALCOCO1RAXHOXD10DMRTC2ZNF141NR2F1mxd4-max_humanHINFPTEAD3HDXZNF284RFX4KLF5ZNF184ZNF526MAFAFOXF2PROX2ZNF449ZNF892ZNF514MYNNZBTB34POU2F1DLX3ZNF280DZNF570ATF1GATA1ZBTB38ZNF382ELF4BACH1LEUTXZNF543NACC1WBP2BMI1HDAC6HNRNPUMSGN1NHLH2NKX2-1ZKSCAN1SMAD4HOXD11ZNF763ZSCAN5CZKSCAN2ZNF76mxi1-max_humanZNF410PBX4ZNF714IRF9POU5F2OTX1ZFP28WT1RARGSOX7ZNF99HOXB13ZBTB32H3-3AZFATEBF3ZNF692HOXB6ZBTB7AFOXF1ZNF728HDAC1NR4A1TPRX1PAX7tfiia_humanZBTB14TFAP4ZSCAN31EN1PITX1TFAP2BZFXFOXD4L1HOXA3MSCLITAFNFIBGATA3ZNF678NKX2-3DLX1ZNF773ZNF418PAX9ZNF786DPRXHNF1BEZH2RXRAKLF3ZNF584ZIK1ZNF677HSFX4ZNF821VAX2NFIAZNF789TET3PLAG1ZSCAN4MECOMZNF813ZNF595FOXI3HIC2THAP11TBX6TFCP2L1TCF3DMTF1ZNF264ZNF740EGR2FOXS1MEIS3P1ZNF415FOXC1PPARAZNF146FOXO6PAX6ZNF679NFAT5RELAZNF319HIF3AZNF780AIRX5JDP2ZNF683ARXZNF154LOC402624EHFSOX6ZBTB43ZSCAN20ZNF75DSOX15NFE2L1ZNF280APRDM1POU4F1ARNTMZF1ZNF350MAFSTAT4ZSCAN16ZNF335HOXB5LHX3ZNF577ZNF143ZNF615ZNF548CRXHOXB1CREB3ZNF649ZNF114HOXC5ZNF730ZNF236STAT6IRF4ATF4ZNF567ZNF774ZNF317ZNF561ZFHX2ZNF417NKX6-2ZNF492HOXD4ZNF497ZNF107mxd1-mlx_humanmlxip-mlx_humanZSCAN23IRF8FOXA2FOXP2RFX8ZNF446YY1FOXL2ZNF112GLI2HOXB3ONECUT1ZNF383SOHLH2ZNF888NR4A3ZNF585BNOTOZNF473ZNF502ZNF33BZNF23EBF1ZNF528ZNF837NFICUSP3ZNF761SOX21SP1PAX8ZNF655ZNF419FOXC2ZBTB41ZNF658HOXA11TGIF2LYSOX9TBX15ZNF165ZNF613MNTZNF48IRF1FOXJ3GATA6ZNF573HSFX3FOXK2GSX1FOXA3ZNF765TBX10NKX2-5SOX30ZSCAN9SIX2ZNF397SRFCDX2IKZF5ZNF471IRF5CEBPEZNF675TFAP2EZBTB22RELBTFAP2CZBTB11SRYHOXC13NFIXTFEBZNF610ZNF664KDM2BASCL1TEAD1ZSCAN21GCM1ZNF581SOX13ZFP92DMRT2ZNF232PER1RFX1ZNF324IRX2ARNT2NANOGP1CDX1DACH1NR5A2ZKSCAN4FOXO1HOXA5ZNF682ANHXZNF713MTA1E2F1NKRFOVOL2ZNF519ZBTB24GRHL2ZBTB25ZNF840PSIX1MESP2ZNF98ZNF721PAX2SOX8ETV4ZNF701ZNF205ZBTB12ZNF182NFE2L2TBXTZNF793CHD2NFYCKLF7DLX6KLF17SOX14SOX1ZNF860NKX3-1HES4HOXC4ZNF845ZNF324BRAD23BZNF607GLIS3RBPJE2F5THAP1ZNF879ZNF594GLIS1ZBTB9DNMT3APAX4ZNF394ZGPATNR3C1NFATC3SUB1ZNF429