HOXD3 | OmnibusX

Name	Number of supported studies	Average coverage
endothelial cell of lymphatic vessel	4 studies	34% ± 10%	Explore

sc-RNAseq data

Insufficient scRNA-seq data for expression of HOXD3 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
adrenal gland	100%	414.09	258 / 258	94%	7.98	217 / 230
ovary	100%	960.76	180 / 180	87%	23.87	375 / 430
kidney	100%	1231.73	89 / 89	82%	4.76	742 / 901
skin	88%	128.73	1593 / 1809	77%	2.87	365 / 472
uterus	100%	1644.40	170 / 170	55%	2.39	254 / 459
breast	100%	611.35	459 / 459	42%	1.07	465 / 1118
bladder	95%	194.76	20 / 21	43%	1.27	216 / 504
prostate	100%	337.23	245 / 245	23%	0.46	114 / 502
intestine	99%	269.19	960 / 966	20%	0.39	107 / 527
esophagus	83%	103.02	1203 / 1445	31%	0.77	57 / 183
spleen	100%	294.05	241 / 241	0%	0	0 / 0
adipose	100%	404.09	1201 / 1204	0%	0	0 / 0
thymus	81%	90.02	532 / 653	4%	0.10	27 / 605
blood vessel	83%	125.84	1110 / 1335	0%	0	0 / 0
brain	10%	26.17	253 / 2642	44%	2.43	313 / 705
stomach	39%	38.50	139 / 359	14%	0.33	41 / 286
lung	21%	20.05	124 / 578	30%	0.85	348 / 1155
muscle	45%	34.98	358 / 803	0%	0	0 / 0
tonsil	0%	0	0 / 0	22%	0.90	10 / 45
pancreas	3%	2.66	11 / 328	13%	0.28	24 / 178
eye	0%	0	0 / 0	13%	0.50	10 / 80
liver	0%	0.45	1 / 226	5%	0.11	21 / 406
heart	4%	3.29	34 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	3%	0.06	1 / 29
peripheral blood	0%	0.07	1 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0007219	Biological process	Notch signaling pathway
GO_0007160	Biological process	cell-matrix adhesion
GO_0006357	Biological process	regulation of transcription by RNA polymerase II
GO_0048704	Biological process	embryonic skeletal system morphogenesis
GO_0010628	Biological process	positive regulation of gene expression
GO_0030878	Biological process	thyroid gland development
GO_0021615	Biological process	glossopharyngeal nerve morphogenesis
GO_0006351	Biological process	DNA-templated transcription
GO_0009952	Biological process	anterior/posterior pattern specification
GO_0045666	Biological process	positive regulation of neuron differentiation
GO_0051216	Biological process	cartilage development
GO_0045944	Biological process	positive regulation of transcription by RNA polymerase II
GO_0005654	Cellular component	nucleoplasm
GO_0016604	Cellular component	nuclear body
GO_0000785	Cellular component	chromatin
GO_0016235	Cellular component	aggresome
GO_0005634	Cellular component	nucleus
GO_0000978	Molecular function	RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO_0001228	Molecular function	DNA-binding transcription activator activity, RNA polymerase II-specific
GO_0000977	Molecular function	RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO_0000981	Molecular function	DNA-binding transcription factor activity, RNA polymerase II-specific
GO_1990837	Molecular function	sequence-specific double-stranded DNA binding
GO_0005515	Molecular function	protein binding

Gene name	HOXD3
Protein name	Homeobox protein Hox-D3 (Homeobox protein Hox-4A) Homeobox D3 Alternative protein HOXD3
Synonyms	HOX4A HOX1D
Description	FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.
Accessions	P31249 ENST00000432796.2 ENST00000249440.4 ENST00000683222.1 C9J1M3 L8E8D1 ENST00000410016.5

HOXD3 report