Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 7 studies | 24% ± 5% | |
GABAergic neuron | 5 studies | 30% ± 18% | |
endothelial cell | 5 studies | 25% ± 6% | |
glutamatergic neuron | 5 studies | 34% ± 17% | |
oligodendrocyte precursor cell | 4 studies | 26% ± 9% | |
neuron | 4 studies | 25% ± 9% | |
retinal cone cell | 4 studies | 25% ± 6% | |
brush cell | 4 studies | 37% ± 10% | |
interneuron | 4 studies | 29% ± 18% | |
retinal bipolar neuron | 3 studies | 30% ± 10% | |
rod bipolar cell | 3 studies | 32% ± 12% | |
transit amplifying cell | 3 studies | 26% ± 13% | |
oligodendrocyte | 3 studies | 21% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3679.39 | 1445 / 1445 | 100% | 37.61 | 183 / 183 |
pancreas | 100% | 2892.60 | 328 / 328 | 100% | 35.73 | 178 / 178 |
thymus | 100% | 3785.70 | 653 / 653 | 100% | 36.98 | 605 / 605 |
uterus | 100% | 3252.46 | 170 / 170 | 100% | 50.57 | 459 / 459 |
brain | 100% | 4307.35 | 2638 / 2642 | 100% | 38.37 | 705 / 705 |
ovary | 100% | 3052.48 | 180 / 180 | 100% | 51.98 | 429 / 430 |
stomach | 100% | 2945.89 | 359 / 359 | 100% | 47.06 | 285 / 286 |
intestine | 100% | 4927.75 | 966 / 966 | 100% | 53.89 | 525 / 527 |
adrenal gland | 100% | 2499.57 | 258 / 258 | 100% | 31.22 | 229 / 230 |
prostate | 100% | 4469.73 | 245 / 245 | 99% | 34.72 | 499 / 502 |
breast | 100% | 3815.17 | 459 / 459 | 99% | 37.45 | 1108 / 1118 |
bladder | 100% | 3419.38 | 21 / 21 | 99% | 49.27 | 499 / 504 |
kidney | 100% | 3055.46 | 89 / 89 | 99% | 25.97 | 891 / 901 |
lung | 100% | 2890.54 | 577 / 578 | 99% | 33.04 | 1141 / 1155 |
skin | 100% | 4302.38 | 1809 / 1809 | 99% | 55.23 | 465 / 472 |
liver | 100% | 2167.52 | 226 / 226 | 98% | 25.60 | 398 / 406 |
adipose | 100% | 2737.98 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 27.21 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 26.40 | 29 / 29 |
spleen | 100% | 2895.66 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 55.46 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 38.68 | 1 / 1 |
muscle | 100% | 2696.46 | 802 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2755.31 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 1842.22 | 848 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 94% | 1713.12 | 870 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0002087 | Biological process | regulation of respiratory gaseous exchange by nervous system process |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0150023 | Biological process | apical dendrite arborization |
GO_1905381 | Biological process | negative regulation of snRNA transcription by RNA polymerase II |
GO_0043123 | Biological process | positive regulation of canonical NF-kappaB signal transduction |
GO_0007032 | Biological process | endosome organization |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005813 | Cellular component | centrosome |
GO_0070062 | Cellular component | extracellular exosome |
GO_0001650 | Cellular component | fibrillar center |
GO_0005829 | Cellular component | cytosol |
GO_0010008 | Cellular component | endosome membrane |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0001227 | Molecular function | DNA-binding transcription repressor activity, RNA polymerase II-specific |
GO_0045296 | Molecular function | cadherin binding |
GO_0005515 | Molecular function | protein binding |
Gene name | CC2D1A |
Protein name | CC2D1A protein Coiled-coil and C2 domain-containing protein 1A (Akt kinase-interacting protein 1) (Five prime repressor element under dual repression-binding protein 1) (FRE under dual repression-binding protein 1) (Freud-1) (Putative NF-kappa-B-activating protein 023N) Coiled-coil and C2 domain containing 1A |
Synonyms | LGD2 AKI1 |
Description | FUNCTION: Transcription factor that binds specifically to the DRE (dual repressor element) and represses HTR1A gene transcription in neuronal cells. The combination of calcium and ATP specifically inactivates the binding with FRE. May play a role in the altered regulation of HTR1A associated with anxiety and major depression. Mediates HDAC-independent repression of HTR1A promoter in neuronal cell. Performs essential function in controlling functional maturation of synapses (By similarity). Plays distinct roles depending on its localization. When cytoplasmic, acts as a scaffold protein in the PI3K/PDK1/AKT pathway. Repressor of HTR1A when nuclear. In the centrosome, regulates spindle pole localization of the cohesin subunit SCC1/RAD21, thereby mediating centriole cohesion during mitosis. . |
Accessions | ENST00000680977.1 ENST00000587508.1 Q6P1N0 Q24K25 A0A7P0Z4M5 K7EJY5 ENST00000672017.1 [Q6P1N0-1] ENST00000318003.11 [Q6P1N0-1] ENST00000586955.5 ENST00000672339.1 [Q6P1N0-2] ENST00000589606.5 [Q6P1N0-2] K7EMP1 |