SCRT1 | OmnibusX

Name	Number of supported studies	Average coverage
retinal ganglion cell	4 studies	63% ± 22%	Explore

sc-RNAseq data

Insufficient scRNA-seq data for expression of SCRT1 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	97%	5578.43	2565 / 2642	86%	20.92	609 / 705
adrenal gland	9%	68.42	24 / 258	67%	14.04	155 / 230
pancreas	1%	2.17	2 / 328	12%	0.50	22 / 178
breast	0%	0	0 / 459	3%	0.28	32 / 1118
eye	0%	0	0 / 0	3%	0.59	2 / 80
uterus	0%	0	0 / 170	2%	0.04	8 / 459
ovary	0%	0	0 / 180	2%	0.08	7 / 430
kidney	0%	0	0 / 89	2%	0.45	14 / 901
stomach	0%	0	0 / 359	1%	0.10	4 / 286
intestine	0%	0	0 / 966	1%	0.06	7 / 527
bladder	0%	0	0 / 21	1%	0.02	4 / 504
skin	0%	0	0 / 1809	1%	0.02	3 / 472
prostate	0%	0	0 / 245	1%	0.09	3 / 502
lung	0%	0	0 / 578	1%	0.06	6 / 1155
liver	0%	0	0 / 226	0%	0.00	1 / 406
abdomen	0%	0	0 / 0	0%	0	0 / 0
adipose	0%	0	0 / 1204	0%	0	0 / 0
blood vessel	0%	0	0 / 1335	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
esophagus	0%	0	0 / 1445	0%	0	0 / 183
gingiva	0%	0	0 / 0	0%	0	0 / 0
heart	0%	0	0 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
muscle	0%	0	0 / 803	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
thymus	0%	0	0 / 653	0%	0	0 / 605
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_2001222	Biological process	regulation of neuron migration
GO_0000122	Biological process	negative regulation of transcription by RNA polymerase II
GO_0006355	Biological process	regulation of DNA-templated transcription
GO_0016604	Cellular component	nuclear body
GO_1990837	Molecular function	sequence-specific double-stranded DNA binding
GO_0000978	Molecular function	RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO_0003700	Molecular function	DNA-binding transcription factor activity
GO_0000977	Molecular function	RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO_0001227	Molecular function	DNA-binding transcription repressor activity, RNA polymerase II-specific
GO_0000981	Molecular function	DNA-binding transcription factor activity, RNA polymerase II-specific
GO_0043565	Molecular function	sequence-specific DNA binding
GO_0046872	Molecular function	metal ion binding

Gene name	SCRT1
Protein name	Transcriptional repressor scratch 1 (Scratch homolog 1 zinc finger protein) (SCRT) (Scratch 1) (hScrt)
Synonyms
Description	FUNCTION: Transcriptional repressor that binds E-box motif CAGGTG. Can modulate the action of basic helix-loop-helix (bHLH) transcription factors, critical for neuronal differentiation. .
Accessions	Q9BWW7 ENST00000645782.2 ENST00000569446.3

SCRT1 report