Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 19 studies | 81% ± 19% | |
lung | 16 studies | 80% ± 17% | |
intestine | 10 studies | 82% ± 16% | |
eye | 9 studies | 60% ± 21% | |
kidney | 8 studies | 75% ± 21% | |
liver | 7 studies | 57% ± 35% | |
brain | 6 studies | 42% ± 23% | |
lymph node | 6 studies | 83% ± 14% | |
bone marrow | 4 studies | 83% ± 17% | |
uterus | 4 studies | 93% ± 5% | |
breast | 4 studies | 88% ± 5% | |
pancreas | 3 studies | 78% ± 21% | |
prostate | 3 studies | 96% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2740.29 | 1445 / 1445 | 100% | 48.01 | 183 / 183 |
ovary | 100% | 2666.17 | 180 / 180 | 100% | 89.79 | 430 / 430 |
lung | 100% | 3330.78 | 578 / 578 | 100% | 36.26 | 1154 / 1155 |
breast | 100% | 2956.13 | 459 / 459 | 100% | 55.11 | 1116 / 1118 |
prostate | 100% | 2459.94 | 245 / 245 | 99% | 28.84 | 498 / 502 |
uterus | 100% | 2806.59 | 170 / 170 | 99% | 41.45 | 455 / 459 |
thymus | 100% | 2673.44 | 653 / 653 | 99% | 30.09 | 596 / 605 |
brain | 99% | 1508.67 | 2623 / 2642 | 99% | 31.11 | 697 / 705 |
pancreas | 99% | 1503.98 | 325 / 328 | 99% | 25.52 | 176 / 178 |
skin | 100% | 2781.25 | 1809 / 1809 | 97% | 22.38 | 456 / 472 |
bladder | 100% | 2242.24 | 21 / 21 | 95% | 30.27 | 481 / 504 |
stomach | 100% | 2137.85 | 359 / 359 | 95% | 42.93 | 271 / 286 |
adrenal gland | 100% | 2518.13 | 258 / 258 | 93% | 15.86 | 215 / 230 |
kidney | 100% | 2202.97 | 89 / 89 | 93% | 16.71 | 839 / 901 |
intestine | 100% | 2997.18 | 966 / 966 | 91% | 30.55 | 480 / 527 |
liver | 99% | 1150.93 | 223 / 226 | 92% | 16.54 | 374 / 406 |
adipose | 100% | 3010.14 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 26.99 | 29 / 29 |
peripheral blood | 100% | 11619.52 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 3459.72 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 32.51 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 16.47 | 1 / 1 |
blood vessel | 100% | 2485.50 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 1561.81 | 795 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 1648.57 | 833 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 86% | 11.45 | 69 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008283 | Biological process | cell population proliferation |
GO_0030307 | Biological process | positive regulation of cell growth |
GO_1902340 | Biological process | negative regulation of chromosome condensation |
GO_0042692 | Biological process | muscle cell differentiation |
GO_0001649 | Biological process | osteoblast differentiation |
GO_0035264 | Biological process | multicellular organism growth |
GO_0006334 | Biological process | nucleosome assembly |
GO_0001556 | Biological process | oocyte maturation |
GO_0006997 | Biological process | nucleus organization |
GO_0031509 | Biological process | subtelomeric heterochromatin formation |
GO_0090230 | Biological process | regulation of centromere complex assembly |
GO_0008584 | Biological process | male gonad development |
GO_0032200 | Biological process | telomere organization |
GO_0007338 | Biological process | single fertilization |
GO_0031508 | Biological process | pericentric heterochromatin formation |
GO_0007286 | Biological process | spermatid development |
GO_0007566 | Biological process | embryo implantation |
GO_0005576 | Cellular component | extracellular region |
GO_0000786 | Cellular component | nucleosome |
GO_0000939 | Cellular component | inner kinetochore |
GO_0070062 | Cellular component | extracellular exosome |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0001740 | Cellular component | Barr body |
GO_0000781 | Cellular component | chromosome, telomeric region |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0031492 | Molecular function | nucleosomal DNA binding |
GO_0030527 | Molecular function | structural constituent of chromatin |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0005515 | Molecular function | protein binding |
GO_0000979 | Molecular function | RNA polymerase II core promoter sequence-specific DNA binding |
Gene name | H3-3A |
Protein name | Histone H3.3 Histone H3 |
Synonyms | H3F3A H3.3B H3-3B H3F3B H3F3 H3.3A PP781; |
Description | FUNCTION: Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. . FUNCTION: Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. . |
Accessions | ENST00000366815.10 ENST00000366814.3 ENST00000666609.1 ENST00000586607.5 ENST00000589599.5 ENST00000661429.1 ENST00000254810.8 ENST00000366813.1 ENST00000667897.1 B4DEB1 ENST00000366816.5 ENST00000655399.1 ENST00000587560.5 A0A590UJJ6 P84243 |