retinal rod cell report

I. Related cell sub types

II. Gene markers

Gene
Number of
supported studies
Average coverage
Other major groups
(express this gene)
Other cell types
(express this gene)
CNGA1974% ± 13%00
NR2E3974% ± 15%00
RAX2935% ± 23%01
KCNV2960% ± 21%01
PRPH2970% ± 17%01
IMPG1972% ± 15%01
CNGB1980% ± 13%02
PDC978% ± 17%02
IMPG2960% ± 21%02
MPP4965% ± 17%02
AIPL1988% ± 9%03
CABP5950% ± 17%04
GNB3952% ± 17%04
CPLX4942% ± 22%04
CLUL1848% ± 12%00
PPEF2851% ± 20%01
RS1838% ± 21%01
RDH12848% ± 16%01
TULP1854% ± 15%01
CDHR1836% ± 9%01
RTBDN856% ± 26%01
RBP3852% ± 22%02
RDH8832% ± 11%02
PDE6A892% ± 7%03
USH2A855% ± 36%03
CRX950% ± 13%14
PDE6B951% ± 19%14
FAM161A954% ± 18%15
NEUROD1946% ± 22%18
RP1983% ± 11%24

III. Associated gene sets

GO_0097719Biological processneural tissue regeneration
GO_2000768Biological processpositive regulation of nephron tubule epithelial cell differentiation
GO_0016056Biological processG protein-coupled opsin signaling pathway
GO_0050917Biological processsensory perception of umami taste
GO_0001895Biological processretina homeostasis
GO_1901985Biological processpositive regulation of protein acetylation
GO_0032218Biological processriboflavin transport
GO_0014046Biological processdopamine secretion
GO_0060221Biological processretinal rod cell differentiation
GO_0018343Biological processprotein farnesylation
GO_0051344Biological processnegative regulation of cyclic-nucleotide phosphodiesterase activity
GO_1900746Biological processregulation of vascular endothelial growth factor signaling pathway
GO_0032350Biological processregulation of hormone metabolic process
GO_0060259Biological processregulation of feeding behavior
GO_0033365Biological processprotein localization to organelle
GO_0042461Biological processphotoreceptor cell development
GO_0031509Biological processsubtelomeric heterochromatin formation
GO_0090207Biological processregulation of triglyceride metabolic process
GO_0007603Biological processphototransduction, visible light
GO_0060042Biological processretina morphogenesis in camera-type eye
GO_0006910Biological processphagocytosis, recognition
GO_0022400Biological processregulation of opsin-mediated signaling pathway
GO_0044782Biological processcilium organization
GO_0051291Biological processprotein heterooligomerization
GO_0110095Biological processcellular detoxification of aldehyde
GO_1902857Biological processpositive regulation of non-motile cilium assembly
GO_0048025Biological processnegative regulation of mRNA splicing, via spliceosome
GO_0060219Biological processcamera-type eye photoreceptor cell differentiation
GO_0007212Biological processG protein-coupled dopamine receptor signaling pathway
GO_0099105Biological procession channel modulating, G protein-coupled receptor signaling pathway

IV. Literature review

[source]
Cell type nameretinal rod cell
Synonyms
DescriptionOne of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision.
ParentCL_0010009