CRX | OmnibusX

Name	Number of supported studies	Average coverage
retinal rod cell	9 studies	50% ± 13%	Explore
retinal cone cell	8 studies	59% ± 23%	Explore
retinal pigment epithelial cell	4 studies	30% ± 8%	Explore
retinal bipolar neuron	3 studies	33% ± 4%	Explore
rod bipolar cell	3 studies	23% ± 4%	Explore

Name	Number of supported studies	Average coverage
eye	7 studies	35% ± 13%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
liver	93%	14.01	211 / 226	0%	0	0 / 406
ovary	67%	1.53	121 / 180	0%	0	0 / 430
thymus	64%	1.23	421 / 653	0%	0	0 / 605
uterus	63%	1.47	107 / 170	0%	0	0 / 459
prostate	62%	1.21	151 / 245	0%	0.03	1 / 502
lung	60%	1.06	347 / 578	0%	0.02	5 / 1155
adrenal gland	58%	1.22	149 / 258	0%	0	0 / 230
brain	58%	1.41	1520 / 2642	0%	0.01	1 / 705
breast	57%	1.08	262 / 459	0%	0.00	1 / 1118
intestine	56%	1.00	542 / 966	1%	0.01	5 / 527
blood vessel	56%	1.08	746 / 1335	0%	0	0 / 0
esophagus	54%	0.95	782 / 1445	1%	0.03	2 / 183
spleen	54%	1.26	131 / 241	0%	0	0 / 0
adipose	54%	0.95	649 / 1204	0%	0	0 / 0
skin	54%	1.72	972 / 1809	0%	0	0 / 472
kidney	53%	1.03	47 / 89	1%	0.04	6 / 901
stomach	48%	0.86	174 / 359	3%	0.05	8 / 286
peripheral blood	49%	0.90	455 / 929	0%	0	0 / 0
bladder	43%	0.95	9 / 21	0%	0	0 / 504
heart	42%	0.64	361 / 861	0%	0	0 / 0
muscle	39%	0.68	315 / 803	0%	0	0 / 0
pancreas	39%	0.65	128 / 328	0%	0	0 / 178
eye	0%	0	0 / 0	10%	2.93	8 / 80
tonsil	0%	0	0 / 0	2%	0.03	1 / 45
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0007601	Biological process	visual perception
GO_0006357	Biological process	regulation of transcription by RNA polymerase II
GO_0009887	Biological process	animal organ morphogenesis
GO_0030154	Biological process	cell differentiation
GO_0006355	Biological process	regulation of DNA-templated transcription
GO_0007399	Biological process	nervous system development
GO_0045944	Biological process	positive regulation of transcription by RNA polymerase II
GO_0090575	Cellular component	RNA polymerase II transcription regulator complex
GO_0000785	Cellular component	chromatin
GO_0005634	Cellular component	nucleus
GO_0000978	Molecular function	RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO_0016922	Molecular function	nuclear receptor binding
GO_0001228	Molecular function	DNA-binding transcription activator activity, RNA polymerase II-specific
GO_0000977	Molecular function	RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO_0000981	Molecular function	DNA-binding transcription factor activity, RNA polymerase II-specific
GO_1990837	Molecular function	sequence-specific double-stranded DNA binding
GO_0043522	Molecular function	leucine zipper domain binding
GO_0061629	Molecular function	RNA polymerase II-specific DNA-binding transcription factor binding
GO_0003700	Molecular function	DNA-binding transcription factor activity
GO_0001216	Molecular function	DNA-binding transcription activator activity
GO_0005515	Molecular function	protein binding

Gene name	CRX
Protein name	Cone-rod homeobox protein Cone-rod homeobox
Synonyms	CORD2
Description	FUNCTION: Transcription factor that binds and transactivates the sequence 5'-TAATC[CA]-3' which is found upstream of several photoreceptor-specific genes, including the opsin genes. Acts synergistically with other transcription factors, such as NRL, RORB and RAX, to regulate photoreceptor cell-specific gene transcription. Essential for the maintenance of mammalian photoreceptors. .
Accessions	A4GUB7 ENST00000613299.1 H3BUU7 O43186 ENST00000566686.5 ENST00000221996.12 A0A087WTS9

CRX report