MPP4 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
retinal cone cell	9 studies	87% ± 11%	Explore
retinal rod cell	9 studies	65% ± 17%	Explore
glutamatergic neuron	3 studies	21% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
eye	6 studies	44% ± 11%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
skin	89%	132.33	1603 / 1809	15%	0.35	71 / 472
adrenal gland	99%	60.54	255 / 258	1%	0.02	2 / 230
spleen	100%	203.14	240 / 241	0%	0	0 / 0
breast	90%	24.58	414 / 459	0%	0.00	2 / 1118
brain	87%	57.17	2302 / 2642	3%	0.05	20 / 705
prostate	87%	19.84	212 / 245	0%	0	0 / 502
adipose	86%	20.02	1032 / 1204	0%	0	0 / 0
blood vessel	82%	18.41	1098 / 1335	0%	0	0 / 0
ovary	80%	15.25	144 / 180	0%	0.00	1 / 430
lung	78%	15.73	450 / 578	1%	0.02	10 / 1155
uterus	78%	18.83	133 / 170	0%	0	0 / 459
bladder	71%	13.81	15 / 21	0%	0.00	1 / 504
thymus	64%	9.30	420 / 653	0%	0	0 / 605
kidney	58%	8.97	52 / 89	0%	0.01	2 / 901
liver	53%	6.53	120 / 226	0%	0.01	1 / 406
stomach	51%	7.14	184 / 359	2%	0.03	5 / 286
esophagus	49%	7.44	713 / 1445	1%	0.02	2 / 183
intestine	47%	6.28	454 / 966	1%	0.03	3 / 527
muscle	47%	6.34	375 / 803	0%	0	0 / 0
heart	41%	6.03	355 / 861	0%	0	0 / 0
pancreas	23%	2.44	77 / 328	0%	0	0 / 178
eye	0%	0	0 / 0	19%	0.82	15 / 80
peripheral blood	7%	0.75	68 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1