PDC report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
retinal cone cell	9 studies	79% ± 17%	Explore
retinal rod cell	9 studies	78% ± 17%	Explore
retinal bipolar neuron	3 studies	25% ± 4%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
eye	7 studies	49% ± 20%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	83%	8.46	2204 / 2642	3%	0.04	18 / 705
prostate	79%	4.29	194 / 245	2%	0.03	9 / 502
thymus	80%	5.43	525 / 653	0%	0.01	2 / 605
uterus	78%	4.31	133 / 170	1%	0.03	6 / 459
intestine	76%	4.04	733 / 966	3%	0.09	17 / 527
muscle	79%	4.49	632 / 803	0%	0	0 / 0
esophagus	66%	3.35	957 / 1445	11%	0.21	21 / 183
pancreas	75%	4.11	246 / 328	2%	0.02	3 / 178
skin	75%	4.99	1356 / 1809	1%	0.01	4 / 472
lung	72%	3.60	416 / 578	4%	0.19	41 / 1155
breast	73%	4.19	335 / 459	2%	0.11	23 / 1118
bladder	71%	3.95	15 / 21	3%	0.10	13 / 504
heart	73%	3.87	631 / 861	0%	0	0 / 0
blood vessel	73%	4.08	972 / 1335	0%	0	0 / 0
adipose	70%	3.64	841 / 1204	0%	0	0 / 0
stomach	63%	2.94	227 / 359	6%	0.16	17 / 286
ovary	56%	2.53	100 / 180	1%	0.03	6 / 430
liver	56%	2.39	126 / 226	0%	0	0 / 406
kidney	48%	1.64	43 / 89	1%	0.03	5 / 901
adrenal gland	45%	1.58	115 / 258	0%	0.03	1 / 230
spleen	42%	1.69	101 / 241	0%	0	0 / 0
peripheral blood	29%	1.72	267 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	8%	3.31	6 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1