TBXT | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of TBXT at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	84%	31.03	550 / 653	6%	0.27	36 / 605
spleen	53%	8.39	128 / 241	0%	0	0 / 0
adipose	36%	7.17	428 / 1204	0%	0	0 / 0
esophagus	31%	5.55	443 / 1445	2%	0.04	4 / 183
intestine	25%	2.24	238 / 966	3%	0.08	14 / 527
peripheral blood	24%	128.47	227 / 929	0%	0	0 / 0
breast	21%	3.02	95 / 459	1%	0.04	10 / 1118
lung	11%	0.89	65 / 578	10%	0.63	117 / 1155
stomach	9%	0.73	31 / 359	3%	0.22	10 / 286
skin	10%	0.65	185 / 1809	0%	0	0 / 472
brain	9%	0.67	241 / 2642	1%	0.03	4 / 705
prostate	8%	0.49	19 / 245	0%	0	0 / 502
bladder	5%	0.19	1 / 21	3%	0.10	14 / 504
ovary	6%	0.59	10 / 180	2%	0.08	7 / 430
uterus	5%	0.26	9 / 170	2%	0.03	7 / 459
kidney	7%	0.33	6 / 89	0%	0	0 / 901
blood vessel	6%	0.54	78 / 1335	0%	0	0 / 0
heart	6%	0.29	48 / 861	0%	0	0 / 0
adrenal gland	3%	0.29	9 / 258	0%	0	0 / 230
muscle	3%	0.19	28 / 803	0%	0	0 / 0
lymph node	0%	0	0 / 0	3%	0.44	1 / 29
pancreas	2%	0.07	5 / 328	2%	0.03	3 / 178
tonsil	0%	0	0 / 0	2%	0.05	1 / 45
liver	2%	0.11	4 / 226	0%	0	0 / 406
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0007498	Biological process	mesoderm development
GO_0001708	Biological process	cell fate specification
GO_0090009	Biological process	primitive streak formation
GO_0006357	Biological process	regulation of transcription by RNA polymerase II
GO_0007165	Biological process	signal transduction
GO_0008595	Biological process	anterior/posterior axis specification, embryo
GO_0000122	Biological process	negative regulation of transcription by RNA polymerase II
GO_0043433	Biological process	negative regulation of DNA-binding transcription factor activity
GO_0001707	Biological process	mesoderm formation
GO_0060379	Biological process	cardiac muscle cell myoblast differentiation
GO_0001756	Biological process	somitogenesis
GO_0003007	Biological process	heart morphogenesis
GO_0045944	Biological process	positive regulation of transcription by RNA polymerase II
GO_0005654	Cellular component	nucleoplasm
GO_0000785	Cellular component	chromatin
GO_0005634	Cellular component	nucleus
GO_0000978	Molecular function	RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO_0000981	Molecular function	DNA-binding transcription factor activity, RNA polymerase II-specific
GO_1990837	Molecular function	sequence-specific double-stranded DNA binding
GO_0061629	Molecular function	RNA polymerase II-specific DNA-binding transcription factor binding
GO_0003700	Molecular function	DNA-binding transcription factor activity

Gene name	TBXT
Protein name	T-box transcription factor T (Brachyury protein) (Protein T) Troponin T protein
Synonyms	T troponin
Description	FUNCTION: Involved in the transcriptional regulation of genes required for mesoderm formation and differentiation. Binds to a palindromic T site 5'-TTCACACCTAGGTGTGAA-3' DNA sequence and activates gene transcription when bound to such a site. .
Accessions	ENST00000461348.2 ENST00000366871.7 [O15178-2] J3KP65 ENST00000366876.7 V9H0A7 ENST00000296946.6 [O15178-1] O15178 H0YM91

TBXT report