Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 15 studies | 23% ± 6% | |
astrocyte | 7 studies | 23% ± 9% | |
endothelial cell of lymphatic vessel | 6 studies | 33% ± 11% | |
glutamatergic neuron | 5 studies | 35% ± 12% | |
neuron | 4 studies | 26% ± 7% | |
capillary endothelial cell | 3 studies | 17% ± 2% | |
rod bipolar cell | 3 studies | 23% ± 2% | |
GABAergic neuron | 3 studies | 42% ± 5% | |
vein endothelial cell | 3 studies | 28% ± 14% | |
oligodendrocyte | 3 studies | 20% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 31% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 2559.68 | 244 / 245 | 100% | 24.91 | 500 / 502 |
brain | 97% | 1498.54 | 2566 / 2642 | 100% | 39.73 | 702 / 705 |
thymus | 100% | 6318.85 | 653 / 653 | 93% | 22.63 | 560 / 605 |
kidney | 90% | 936.67 | 80 / 89 | 82% | 15.66 | 740 / 901 |
intestine | 97% | 1931.36 | 939 / 966 | 59% | 6.50 | 310 / 527 |
lung | 99% | 1272.74 | 570 / 578 | 45% | 4.21 | 525 / 1155 |
stomach | 90% | 1348.32 | 324 / 359 | 53% | 6.44 | 153 / 286 |
bladder | 100% | 2163.62 | 21 / 21 | 39% | 4.33 | 197 / 504 |
breast | 100% | 1274.12 | 457 / 459 | 37% | 2.04 | 410 / 1118 |
esophagus | 78% | 2307.97 | 1133 / 1445 | 55% | 6.08 | 100 / 183 |
uterus | 99% | 1698.86 | 168 / 170 | 34% | 3.42 | 156 / 459 |
ovary | 100% | 1868.81 | 180 / 180 | 24% | 1.42 | 102 / 430 |
blood vessel | 100% | 4185.52 | 1335 / 1335 | 0% | 0 | 0 / 0 |
adipose | 98% | 1298.98 | 1178 / 1204 | 0% | 0 | 0 / 0 |
adrenal gland | 29% | 182.98 | 76 / 258 | 64% | 7.16 | 147 / 230 |
muscle | 79% | 1068.72 | 633 / 803 | 0% | 0 | 0 / 0 |
skin | 55% | 448.02 | 994 / 1809 | 19% | 1.61 | 90 / 472 |
heart | 74% | 878.30 | 633 / 861 | 0% | 0 | 0 / 0 |
pancreas | 6% | 32.39 | 20 / 328 | 56% | 4.07 | 100 / 178 |
spleen | 41% | 260.65 | 100 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 13% | 1.02 | 6 / 45 |
liver | 3% | 16.80 | 7 / 226 | 6% | 0.39 | 26 / 406 |
eye | 0% | 0 | 0 / 0 | 5% | 0.21 | 4 / 80 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.10 | 1 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0071773 | Biological process | cellular response to BMP stimulus |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0030509 | Biological process | BMP signaling pathway |
GO_0060395 | Biological process | SMAD protein signal transduction |
GO_0030154 | Biological process | cell differentiation |
GO_0009653 | Biological process | anatomical structure morphogenesis |
GO_0007179 | Biological process | transforming growth factor beta receptor signaling pathway |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0071141 | Cellular component | SMAD protein complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0071144 | Cellular component | heteromeric SMAD protein complex |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0046872 | Molecular function | metal ion binding |
GO_0070411 | Molecular function | I-SMAD binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SMAD9 |
Protein name | SMAD family member 9 Mothers against decapentaplegic homolog 9 (MAD homolog 9) (Mothers against DPP homolog 9) (Madh6) (SMAD family member 9) (SMAD 9) (Smad9) |
Synonyms | MADH6 SMAD8 MADH9 |
Description | FUNCTION: Transcriptional modulator activated by BMP (bone morphogenetic proteins) type 1 receptor kinase. SMAD9 is a receptor-regulated SMAD (R-SMAD). |
Accessions | ENST00000350148.10 [O15198-2] A0A7I2R5A4 O15198 ENST00000399275.7 ENST00000379826.5 [O15198-1] |