MSC | OmnibusX

Name	Number of supported studies	Average coverage
fibroblast	4 studies	24% ± 3%	Explore

sc-RNAseq data

Insufficient scRNA-seq data for expression of MSC at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
lung	93%	743.44	538 / 578	78%	18.70	900 / 1155
kidney	80%	448.06	71 / 89	84%	47.29	759 / 901
breast	81%	556.66	374 / 459	76%	10.84	845 / 1118
stomach	79%	332.37	284 / 359	77%	10.98	219 / 286
esophagus	82%	399.60	1179 / 1445	73%	22.79	133 / 183
skin	66%	400.43	1185 / 1809	88%	56.49	416 / 472
uterus	92%	408.65	156 / 170	60%	31.83	276 / 459
pancreas	51%	206.84	167 / 328	92%	23.14	163 / 178
bladder	81%	968.33	17 / 21	61%	14.57	308 / 504
adrenal gland	93%	694.93	239 / 258	36%	9.40	82 / 230
ovary	82%	371.02	147 / 180	44%	6.25	190 / 430
intestine	54%	211.58	522 / 966	69%	9.43	362 / 527
prostate	85%	469.68	209 / 245	26%	2.22	133 / 502
thymus	82%	372.90	535 / 653	23%	4.16	139 / 605
lymph node	0%	0	0 / 0	100%	58.61	29 / 29
spleen	100%	528.22	241 / 241	0%	0	0 / 0
blood vessel	100%	2247.61	1329 / 1335	0%	0	0 / 0
heart	96%	852.39	830 / 861	0%	0	0 / 0
adipose	95%	938.37	1147 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	88%	147.39	70 / 80
liver	41%	113.34	93 / 226	38%	20.94	156 / 406
tonsil	0%	0	0 / 0	78%	15.91	35 / 45
brain	27%	93.55	710 / 2642	16%	2.20	110 / 705
peripheral blood	27%	1367.66	249 / 929	0%	0	0 / 0
muscle	26%	91.67	211 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0003161	Biological process	cardiac conduction system development
GO_0007519	Biological process	skeletal muscle tissue development
GO_0006357	Biological process	regulation of transcription by RNA polymerase II
GO_1990830	Biological process	cellular response to leukemia inhibitory factor
GO_0000122	Biological process	negative regulation of transcription by RNA polymerase II
GO_0060539	Biological process	diaphragm development
GO_0014707	Biological process	branchiomeric skeletal muscle development
GO_0060021	Biological process	roof of mouth development
GO_0006355	Biological process	regulation of DNA-templated transcription
GO_0005654	Cellular component	nucleoplasm
GO_0000785	Cellular component	chromatin
GO_0005634	Cellular component	nucleus
GO_0000978	Molecular function	RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO_0000977	Molecular function	RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO_0001227	Molecular function	DNA-binding transcription repressor activity, RNA polymerase II-specific
GO_0000981	Molecular function	DNA-binding transcription factor activity, RNA polymerase II-specific
GO_1990837	Molecular function	sequence-specific double-stranded DNA binding
GO_0003700	Molecular function	DNA-binding transcription factor activity
GO_0046983	Molecular function	protein dimerization activity
GO_0005515	Molecular function	protein binding

Gene name	MSC
Protein name	Musculin (Activated B-cell factor 1) (ABF-1) (Class A basic helix-loop-helix protein 22) (bHLHa22)
Synonyms	ABF1 BHLHA22
Description	FUNCTION: Transcription repressor capable of inhibiting the transactivation capability of TCF3/E47. May play a role in regulating antigen-dependent B-cell differentiation.
Accessions	O60682 ENST00000325509.5

MSC report