Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 1038.64 | 577 / 578 | 87% | 3.40 | 1008 / 1155 |
thymus | 87% | 346.44 | 568 / 653 | 83% | 4.42 | 500 / 605 |
breast | 92% | 411.87 | 421 / 459 | 69% | 2.11 | 773 / 1118 |
kidney | 74% | 289.54 | 66 / 89 | 75% | 2.37 | 678 / 901 |
liver | 88% | 599.83 | 198 / 226 | 58% | 2.03 | 235 / 406 |
stomach | 66% | 189.58 | 237 / 359 | 62% | 1.64 | 178 / 286 |
esophagus | 51% | 158.82 | 741 / 1445 | 73% | 2.19 | 134 / 183 |
uterus | 55% | 143.49 | 94 / 170 | 65% | 1.77 | 299 / 459 |
intestine | 64% | 348.74 | 620 / 966 | 55% | 1.27 | 289 / 527 |
bladder | 62% | 215.86 | 13 / 21 | 53% | 1.41 | 269 / 504 |
pancreas | 33% | 78.35 | 107 / 328 | 82% | 2.77 | 146 / 178 |
prostate | 72% | 238.70 | 176 / 245 | 34% | 0.64 | 169 / 502 |
skin | 50% | 204.54 | 902 / 1809 | 51% | 1.66 | 241 / 472 |
spleen | 100% | 1699.73 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 97% | 561.48 | 1171 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 91% | 1161.98 | 846 / 929 | 0% | 0 | 0 / 0 |
brain | 62% | 595.11 | 1640 / 2642 | 29% | 1.06 | 203 / 705 |
tonsil | 0% | 0 | 0 / 0 | 84% | 2.85 | 38 / 45 |
lymph node | 0% | 0 | 0 / 0 | 83% | 6.47 | 24 / 29 |
adrenal gland | 22% | 58.77 | 57 / 258 | 55% | 5.54 | 126 / 230 |
heart | 76% | 1132.12 | 654 / 861 | 0% | 0 | 0 / 0 |
ovary | 33% | 78.57 | 60 / 180 | 21% | 0.40 | 89 / 430 |
blood vessel | 36% | 113.45 | 476 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 9% | 0.12 | 7 / 80 |
muscle | 4% | 9.03 | 34 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0019221 | Biological process | cytokine-mediated signaling pathway |
GO_0045063 | Biological process | T-helper 1 cell differentiation |
GO_0043434 | Biological process | response to peptide hormone |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0070741 | Biological process | response to interleukin-6 |
GO_0035722 | Biological process | interleukin-12-mediated signaling pathway |
GO_0007259 | Biological process | cell surface receptor signaling pathway via JAK-STAT |
GO_0042127 | Biological process | regulation of cell population proliferation |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006952 | Biological process | defense response |
GO_0005654 | Cellular component | nucleoplasm |
GO_0090575 | Cellular component | RNA polymerase II transcription regulator complex |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0042802 | Molecular function | identical protein binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | STAT4 |
Protein name | Signal transducer and activator of transcription 4 variant 3 Signal transducer and activator of transcription 4 STAT4 Signal transducer and activator of transcription |
Synonyms | |
Description | FUNCTION: Transcriptional regulator mainly expressed in hematopoietic cells that plays a critical role in cellular growth, differentiation and immune response . Plays a key role in the differentiation of T-helper 1 cells and the production of interferon-gamma . Participates also in multiple neutrophil functions including chemotaxis and production of the neutrophil extracellular traps (By similarity). After IL12 binding to its receptor IL12RB2, STAT4 interacts with the intracellular domain of IL12RB2 and becomes tyrosine phosphorylated . Phosphorylated STAT4 then homodimerizes and migrates to the nucleus where it can recognize STAT target sequences present in IL12 responsive genes. Although IL12 appears to be the predominant activating signal, STAT4 can also be phosphorylated and activated in response to IFN-gamma stimulation via JAK1 and TYK2 and in response to different interleukins including IL23, IL2 and IL35 . Transcription activation of IFN-gamma gene is mediated by interaction with JUN that forms a complex that efficiently interacts with the AP-1-related sequence of the IFN-gamma promoter (By similarity). In response to IFN-alpha/beta signaling, acts as a transcriptional repressor and suppresses IL5 and IL13 mRNA expression during response to T-cell receptor (TCR) activation . . |
Accessions | C9JFG0 ENST00000392320.7 A0A510GAL5 A0A291B130 ENST00000413064.5 C9JM11 E9PG69 E9PBE2 ENST00000432798.1 ENST00000409995.5 ENST00000450994.1 ENST00000358470.8 Q53S87 Q53RU2 Q14765 B7SIX5 A0A2R8Y693 ENST00000647167.1 |