Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 13 studies | 27% ± 12% | |
astrocyte | 11 studies | 40% ± 15% | |
oligodendrocyte precursor cell | 10 studies | 34% ± 16% | |
oligodendrocyte | 8 studies | 30% ± 8% | |
adipocyte | 7 studies | 20% ± 6% | |
fibroblast | 7 studies | 24% ± 9% | |
GABAergic neuron | 7 studies | 48% ± 19% | |
glutamatergic neuron | 6 studies | 52% ± 26% | |
interneuron | 6 studies | 41% ± 22% | |
macrophage | 6 studies | 27% ± 7% | |
microglial cell | 6 studies | 30% ± 8% | |
neuron | 5 studies | 43% ± 20% | |
epithelial cell | 5 studies | 29% ± 10% | |
endothelial cell of lymphatic vessel | 5 studies | 24% ± 6% | |
type I pneumocyte | 5 studies | 38% ± 11% | |
type II pneumocyte | 5 studies | 27% ± 8% | |
cardiac muscle cell | 4 studies | 23% ± 3% | |
ciliated cell | 4 studies | 27% ± 14% | |
club cell | 4 studies | 28% ± 12% | |
pericyte | 4 studies | 24% ± 8% | |
granule cell | 3 studies | 26% ± 4% | |
Mueller cell | 3 studies | 24% ± 3% | |
retina horizontal cell | 3 studies | 22% ± 7% | |
hepatocyte | 3 studies | 34% ± 13% | |
smooth muscle cell | 3 studies | 27% ± 9% | |
basal cell | 3 studies | 28% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 798.80 | 2638 / 2642 | 100% | 10.37 | 703 / 705 |
thymus | 100% | 1695.45 | 653 / 653 | 99% | 12.46 | 598 / 605 |
ovary | 100% | 1393.68 | 180 / 180 | 99% | 8.07 | 425 / 430 |
prostate | 100% | 1234.82 | 245 / 245 | 98% | 8.61 | 493 / 502 |
breast | 100% | 985.90 | 459 / 459 | 98% | 10.38 | 1096 / 1118 |
kidney | 100% | 833.56 | 89 / 89 | 95% | 5.96 | 857 / 901 |
adrenal gland | 100% | 799.92 | 258 / 258 | 93% | 5.18 | 213 / 230 |
pancreas | 99% | 475.09 | 326 / 328 | 92% | 5.24 | 164 / 178 |
bladder | 100% | 903.57 | 21 / 21 | 89% | 7.49 | 448 / 504 |
lung | 100% | 1068.30 | 578 / 578 | 88% | 7.66 | 1019 / 1155 |
stomach | 100% | 709.24 | 359 / 359 | 84% | 5.14 | 239 / 286 |
intestine | 100% | 782.42 | 966 / 966 | 83% | 4.59 | 436 / 527 |
esophagus | 100% | 733.42 | 1445 / 1445 | 70% | 4.86 | 129 / 183 |
skin | 100% | 675.67 | 1805 / 1809 | 68% | 3.34 | 322 / 472 |
liver | 100% | 716.40 | 225 / 226 | 67% | 2.87 | 270 / 406 |
uterus | 100% | 1144.18 | 170 / 170 | 63% | 4.27 | 290 / 459 |
spleen | 100% | 901.30 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.73 | 1 / 1 |
adipose | 100% | 802.56 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 663.78 | 1331 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 548.76 | 848 / 861 | 0% | 0 | 0 / 0 |
muscle | 90% | 250.70 | 722 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 72% | 414.10 | 667 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 66% | 2.74 | 19 / 29 |
eye | 0% | 0 | 0 / 0 | 41% | 1.55 | 33 / 80 |
tonsil | 0% | 0 | 0 / 0 | 40% | 1.63 | 18 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0046872 | Molecular function | metal ion binding |
Gene name | ZNF254 |
Protein name | HCG19985, isoform CRA_b (ZNF254 protein) (Zinc finger protein 254) Zinc finger protein 254 (Bone marrow zinc finger 5) (BMZF-5) (Hematopoietic cell-derived zinc finger protein 1) (HD-ZNF1) (Zinc finger protein 539) (Zinc finger protein 91-like) Zinc finger protein 254 |
Synonyms | ZNF539 BMZF5 hCG_19985 ZNF91L |
Description | FUNCTION: May be involved in transcriptional regulation. |
Accessions | ENST00000613065.4 F5H2M4 M0QZY2 A0A087WZJ7 ENST00000357002.5 [O75437-1] ENST00000595187.1 O75437 Q7Z2R1 ENST00000611359.3 A0A087X0A2 ENST00000339642.10 ENST00000616028.2 M0R2X5 ENST00000594886.5 |