Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 26% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1466.77 | 1445 / 1445 | 9% | 0.13 | 17 / 183 |
kidney | 100% | 1284.20 | 89 / 89 | 4% | 0.07 | 35 / 901 |
bladder | 100% | 1526.67 | 21 / 21 | 2% | 0.09 | 10 / 504 |
breast | 100% | 1519.53 | 459 / 459 | 2% | 0.07 | 20 / 1118 |
stomach | 100% | 1126.81 | 359 / 359 | 2% | 0.07 | 5 / 286 |
lung | 100% | 1443.59 | 578 / 578 | 2% | 0.10 | 20 / 1155 |
intestine | 100% | 1429.89 | 966 / 966 | 2% | 0.04 | 8 / 527 |
prostate | 100% | 1453.26 | 245 / 245 | 1% | 0.03 | 3 / 502 |
pancreas | 99% | 650.10 | 326 / 328 | 1% | 0.04 | 2 / 178 |
ovary | 100% | 1960.59 | 180 / 180 | 0% | 0.01 | 2 / 430 |
uterus | 100% | 1563.19 | 170 / 170 | 0% | 0.02 | 1 / 459 |
adipose | 100% | 1482.35 | 1204 / 1204 | 0% | 0 | 0 / 0 |
adrenal gland | 100% | 1599.72 | 258 / 258 | 0% | 0 | 0 / 230 |
blood vessel | 100% | 1590.75 | 1335 / 1335 | 0% | 0 | 0 / 0 |
skin | 100% | 1873.79 | 1809 / 1809 | 0% | 0 | 0 / 472 |
spleen | 100% | 1200.56 | 241 / 241 | 0% | 0 | 0 / 0 |
thymus | 100% | 1342.57 | 653 / 653 | 0% | 0 | 0 / 605 |
liver | 100% | 708.99 | 225 / 226 | 0% | 0 | 0 / 406 |
brain | 99% | 731.69 | 2612 / 2642 | 0% | 0.01 | 3 / 705 |
muscle | 99% | 729.15 | 797 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 1141.14 | 918 / 929 | 0% | 0 | 0 / 0 |
heart | 96% | 703.20 | 827 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0010629 | Biological process | negative regulation of gene expression |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005694 | Cellular component | chromosome |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0003712 | Molecular function | transcription coregulator activity |
GO_0046872 | Molecular function | metal ion binding |
Gene name | ZNF410 |
Protein name | Zinc finger protein 410, isoform CRA_c (cDNA FLJ53155, highly similar to Zinc finger protein 410) Zinc finger protein 410 Zinc finger protein 410 (Another partner for ARF 1) |
Synonyms | APA1 hCG_21725 |
Description | FUNCTION: Transcription factor that binds to the sequence motif 5'-CATCCCATAATA-3', and is specifically required to silence expression of fetal hemoglobin in adult erythroid cells . Prevents expression of fetal hemoglobin genes HBG1 and HBG2 through CHD4: acts as a direct transcriptional activator of CHD4, a central component of the NuRD complex that represses transcription of fetal hemoglobin genes HBG1 and HBG2 in erythroid cells . May also activate transcription of matrix-remodeling genes such as MMP1 during fibroblast senescence . May activate transcription of the gap junction gene GJC1, perhaps in response to increasing glucose . However, recent studies suggest that ZNF410 is dedicated to regulate expression of a single gene: CHD4 . . |
Accessions | B4DPW2 ENST00000555730.6 G3V2C2 ENST00000334521.8 G3V369 ENST00000324593.10 [Q86VK4-3] ENST00000442160.7 [Q86VK4-5] ENST00000554316.1 G3V398 ENST00000540593.5 [Q86VK4-4] ENST00000556396.5 G3V2V5 G3V2G5 J3KNQ6 ENST00000556659.5 ENST00000557214.2 H0YJI7 G3V4E6 ENST00000554582.5 ENST00000556160.5 ENST00000555044.6 [Q86VK4-1] ENST00000557495.5 ENST00000398139.7 [Q86VK4-2] ENST00000615736.4 [Q86VK4-5] ENST00000556797.1 G3V4H7 G3V3W2 ENST00000556179.5 Q86VK4 G3V4W2 ENST00000554797.3 |