Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| fibroblast | 21 studies | 32% ± 14% | |
| smooth muscle cell | 15 studies | 28% ± 14% | |
| oligodendrocyte | 13 studies | 36% ± 12% | |
| astrocyte | 10 studies | 38% ± 18% | |
| endothelial cell | 10 studies | 34% ± 16% | |
| connective tissue cell | 9 studies | 28% ± 8% | |
| pericyte | 9 studies | 32% ± 17% | |
| oligodendrocyte precursor cell | 9 studies | 26% ± 11% | |
| mesothelial cell | 7 studies | 52% ± 21% | |
| myofibroblast cell | 7 studies | 39% ± 22% | |
| epithelial cell | 7 studies | 40% ± 20% | |
| neuron | 6 studies | 47% ± 18% | |
| basal cell | 6 studies | 34% ± 24% | |
| retina horizontal cell | 6 studies | 53% ± 26% | |
| retinal cone cell | 6 studies | 50% ± 23% | |
| retinal rod cell | 6 studies | 51% ± 26% | |
| glutamatergic neuron | 5 studies | 37% ± 23% | |
| amacrine cell | 5 studies | 33% ± 12% | |
| cardiac muscle cell | 5 studies | 37% ± 8% | |
| interneuron | 4 studies | 24% ± 5% | |
| platelet | 4 studies | 17% ± 2% | |
| hematopoietic stem cell | 4 studies | 31% ± 10% | |
| adipocyte | 4 studies | 27% ± 11% | |
| progenitor cell | 3 studies | 51% ± 18% | |
| interstitial cell of Cajal | 3 studies | 35% ± 12% | |
| granule cell | 3 studies | 60% ± 2% | |
| ciliated cell | 3 studies | 31% ± 4% | |
| GABAergic amacrine cell | 3 studies | 69% ± 14% | |
| Mueller cell | 3 studies | 43% ± 21% | |
| retinal ganglion cell | 3 studies | 44% ± 21% | |
| megakaryocyte-erythroid progenitor cell | 3 studies | 35% ± 9% | |
| adventitial cell | 3 studies | 34% ± 15% | |
| chondrocyte | 3 studies | 45% ± 9% | |
| respiratory goblet cell | 3 studies | 31% ± 9% | |
| GABAergic neuron | 3 studies | 20% ± 0% | |
| mucus secreting cell | 3 studies | 43% ± 20% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| ovary | 100% | 9363.01 | 180 / 180 | 100% | 49.85 | 428 / 430 |
| adrenal gland | 100% | 11515.92 | 258 / 258 | 97% | 13.11 | 224 / 230 |
| pancreas | 100% | 5981.33 | 328 / 328 | 93% | 12.11 | 165 / 178 |
| uterus | 100% | 21054.54 | 170 / 170 | 90% | 19.70 | 415 / 459 |
| prostate | 100% | 8295.98 | 245 / 245 | 69% | 4.54 | 346 / 502 |
| lung | 100% | 8009.98 | 578 / 578 | 68% | 5.01 | 787 / 1155 |
| esophagus | 100% | 11098.33 | 1444 / 1445 | 68% | 4.66 | 124 / 183 |
| bladder | 100% | 8915.05 | 21 / 21 | 56% | 3.98 | 281 / 504 |
| breast | 88% | 3134.20 | 406 / 459 | 40% | 2.02 | 449 / 1118 |
| kidney | 75% | 2039.66 | 67 / 89 | 47% | 2.71 | 420 / 901 |
| intestine | 93% | 10373.13 | 900 / 966 | 28% | 1.92 | 147 / 527 |
| stomach | 65% | 6302.22 | 235 / 359 | 45% | 3.43 | 129 / 286 |
| brain | 34% | 1601.75 | 891 / 2642 | 69% | 4.94 | 483 / 705 |
| skin | 82% | 1867.17 | 1487 / 1809 | 19% | 1.14 | 92 / 472 |
| ureter | 0% | 0 | 0 / 0 | 100% | 4.09 | 1 / 1 |
| spleen | 98% | 4516.42 | 237 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 84% | 10.44 | 38 / 45 |
| heart | 83% | 1921.57 | 714 / 861 | 0% | 0 | 0 / 0 |
| thymus | 55% | 1087.33 | 360 / 653 | 13% | 2.27 | 77 / 605 |
| adipose | 67% | 2619.50 | 801 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 61% | 2045.04 | 816 / 1335 | 0% | 0 | 0 / 0 |
| liver | 3% | 41.73 | 7 / 226 | 8% | 0.38 | 34 / 406 |
| muscle | 2% | 23.47 | 14 / 803 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 1% | 0.12 | 1 / 80 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0045638 | Biological process | negative regulation of myeloid cell differentiation |
| GO_0001525 | Biological process | angiogenesis |
| GO_0030097 | Biological process | hemopoiesis |
| GO_0061049 | Biological process | cell growth involved in cardiac muscle cell development |
| GO_0009887 | Biological process | animal organ morphogenesis |
| GO_0001654 | Biological process | eye development |
| GO_0035855 | Biological process | megakaryocyte development |
| GO_0060216 | Biological process | definitive hemopoiesis |
| GO_0009880 | Biological process | embryonic pattern specification |
| GO_0045665 | Biological process | negative regulation of neuron differentiation |
| GO_0007420 | Biological process | brain development |
| GO_0008284 | Biological process | positive regulation of cell population proliferation |
| GO_0002089 | Biological process | lens morphogenesis in camera-type eye |
| GO_0007626 | Biological process | locomotory behavior |
| GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
| GO_0000785 | Cellular component | chromatin |
| GO_0005667 | Cellular component | transcription regulator complex |
| GO_0005634 | Cellular component | nucleus |
| GO_0003677 | Molecular function | DNA binding |
| GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
| GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO_0003682 | Molecular function | chromatin binding |
| GO_0005515 | Molecular function | protein binding |
| Gene name | MEIS1 |
| Protein name | Meis homeobox 1 (Meis1, myeloid ecotropic viral integration site 1 homolog (Mouse), isoform CRA_b) Meis homeobox 1 Homeobox protein Meis1 Uncharacterized protein MEIS1 |
| Synonyms | hCG_1818196 |
| Description | FUNCTION: Acts as a transcriptional regulator of PAX6. Acts as a transcriptional activator of PF4 in complex with PBX1 or PBX2. Required for hematopoiesis, megakaryocyte lineage development and vascular patterning. May function as a cofactor for HOXA7 and HOXA9 in the induction of myeloid leukemias. . |
| Accessions | U3KPR8 ENST00000488550.5 ENST00000272369.14 [O00470-1] Q53R57 E9PDC4 ENST00000437869.1 ENST00000560281.6 Q53RD5 O00470 ENST00000495021.6 H0YNY8 ENST00000398506.6 [O00470-2] F5GYS8 |