Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 5156.20 | 1445 / 1445 | 100% | 81.82 | 183 / 183 |
ovary | 100% | 7248.51 | 180 / 180 | 100% | 116.69 | 430 / 430 |
lung | 100% | 5038.74 | 578 / 578 | 100% | 85.00 | 1153 / 1155 |
skin | 100% | 6594.09 | 1809 / 1809 | 100% | 110.03 | 471 / 472 |
uterus | 100% | 6568.01 | 170 / 170 | 100% | 99.11 | 458 / 459 |
pancreas | 100% | 3187.52 | 327 / 328 | 100% | 77.52 | 178 / 178 |
bladder | 100% | 5790.43 | 21 / 21 | 100% | 95.79 | 502 / 504 |
prostate | 100% | 6169.87 | 245 / 245 | 100% | 94.62 | 500 / 502 |
thymus | 100% | 7394.48 | 653 / 653 | 100% | 93.06 | 602 / 605 |
intestine | 100% | 5670.27 | 966 / 966 | 99% | 91.89 | 524 / 527 |
breast | 100% | 5601.85 | 459 / 459 | 99% | 106.17 | 1111 / 1118 |
stomach | 100% | 4636.23 | 359 / 359 | 99% | 89.78 | 284 / 286 |
brain | 99% | 3634.75 | 2620 / 2642 | 100% | 75.24 | 705 / 705 |
kidney | 100% | 4333.01 | 89 / 89 | 98% | 57.23 | 885 / 901 |
adrenal gland | 100% | 5181.73 | 258 / 258 | 97% | 53.91 | 222 / 230 |
liver | 100% | 2390.86 | 225 / 226 | 97% | 53.82 | 393 / 406 |
adipose | 100% | 4577.74 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 105.45 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 87.48 | 29 / 29 |
spleen | 100% | 7936.15 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 90.88 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 57.49 | 1 / 1 |
blood vessel | 100% | 4815.98 | 1333 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 5047.15 | 917 / 929 | 0% | 0 | 0 / 0 |
heart | 99% | 2601.42 | 849 / 861 | 0% | 0 | 0 / 0 |
muscle | 92% | 1611.38 | 736 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0034976 | Biological process | response to endoplasmic reticulum stress |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0007165 | Biological process | signal transduction |
GO_0036500 | Biological process | ATF6-mediated unfolded protein response |
GO_0030968 | Biological process | endoplasmic reticulum unfolded protein response |
GO_1903892 | Biological process | negative regulation of ATF6-mediated unfolded protein response |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0032993 | Cellular component | protein-DNA complex |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0000139 | Cellular component | Golgi membrane |
GO_0090575 | Cellular component | RNA polymerase II transcription regulator complex |
GO_0005829 | Cellular component | cytosol |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0000976 | Molecular function | transcription cis-regulatory region binding |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | ATF6B |
Protein name | Cyclic AMP-dependent transcription factor ATF-6 beta (cAMP-dependent transcription factor ATF-6 beta) (Activating transcription factor 6 beta) (ATF6-beta) (Protein G13) (cAMP response element-binding protein-related protein) (Creb-rp) (cAMP-responsive element-binding protein-like 1) [Cleaved into: Processed cyclic AMP-dependent transcription factor ATF-6 beta] Cyclic AMP-dependent transcription factor ATF-6 beta ATF6B protein (cAMP responsive element binding protein-like 1) Activating transcription factor 6 beta |
Synonyms | CREBL1 G13 |
Description | FUNCTION: [Cyclic AMP-dependent transcription factor ATF-6 beta]: Precursor of the transcription factor form (Processed cyclic AMP-dependent transcription factor ATF-6 beta), which is embedded in the endoplasmic reticulum membrane . Endoplasmic reticulum stress promotes processing of this form, releasing the transcription factor form that translocates into the nucleus, where it activates transcription of genes involved in the unfolded protein response (UPR) . .; FUNCTION: [Processed cyclic AMP-dependent transcription factor ATF-6 beta]: Transcription factor that acts in the unfolded protein response (UPR) pathway by activating UPR target genes induced during ER stress . Binds DNA on the 5'-CCAC[GA]-3' half of the ER stress response element (ERSE) (5'-CCAATN(9)CCAC[GA]-3') when NF-Y is bound to ERSE . . |
Accessions | ENST00000293709.10 [Q99941-1] ENST00000375201.8 [Q99941-2] Q99941 ENST00000439240.6 [Q99941-2] ENST00000413319.1 Q96QL7 ENST00000435768.6 [Q99941-2] A0A0G2JIM1 ENST00000425571.6 [Q99941-1] H0Y7D7 Q6AZW6 ENST00000436157.1 ENST00000383156.8 [Q99941-2] ENST00000375203.8 [Q99941-1] ENST00000453203.2 ENST00000417614.1 ENST00000427136.6 [Q99941-1] |