Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 20 studies | 28% ± 11% | |
fibroblast | 12 studies | 25% ± 9% | |
astrocyte | 11 studies | 29% ± 14% | |
oligodendrocyte | 9 studies | 29% ± 10% | |
oligodendrocyte precursor cell | 8 studies | 29% ± 14% | |
macrophage | 7 studies | 25% ± 6% | |
epithelial cell | 7 studies | 41% ± 21% | |
adipocyte | 7 studies | 23% ± 4% | |
microglial cell | 6 studies | 26% ± 8% | |
retinal cone cell | 6 studies | 30% ± 13% | |
endothelial cell of lymphatic vessel | 6 studies | 29% ± 9% | |
GABAergic neuron | 6 studies | 38% ± 21% | |
type I pneumocyte | 6 studies | 27% ± 9% | |
glutamatergic neuron | 5 studies | 44% ± 22% | |
neuron | 5 studies | 36% ± 13% | |
club cell | 5 studies | 24% ± 8% | |
smooth muscle cell | 5 studies | 23% ± 3% | |
interneuron | 5 studies | 36% ± 21% | |
B cell | 4 studies | 18% ± 2% | |
ciliated cell | 4 studies | 27% ± 6% | |
lymphocyte | 4 studies | 26% ± 6% | |
retina horizontal cell | 4 studies | 19% ± 3% | |
retinal rod cell | 4 studies | 22% ± 6% | |
abnormal cell | 4 studies | 26% ± 8% | |
connective tissue cell | 4 studies | 17% ± 2% | |
pericyte | 4 studies | 23% ± 6% | |
basal cell | 4 studies | 38% ± 26% | |
CD16-negative, CD56-bright natural killer cell, human | 3 studies | 18% ± 2% | |
CD4-positive, alpha-beta T cell | 3 studies | 16% ± 0% | |
capillary endothelial cell | 3 studies | 18% ± 3% | |
glial cell | 3 studies | 19% ± 1% | |
secretory cell | 3 studies | 17% ± 1% | |
endothelial cell of vascular tree | 3 studies | 27% ± 11% | |
natural killer cell | 3 studies | 20% ± 2% | |
adventitial cell | 3 studies | 18% ± 3% | |
T cell | 3 studies | 21% ± 1% | |
myofibroblast cell | 3 studies | 24% ± 6% | |
goblet cell | 3 studies | 31% ± 19% | |
mast cell | 3 studies | 18% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 13942.42 | 245 / 245 | 100% | 19.53 | 501 / 502 |
breast | 100% | 8264.07 | 458 / 459 | 99% | 22.30 | 1111 / 1118 |
thymus | 100% | 13170.52 | 651 / 653 | 99% | 22.11 | 600 / 605 |
ovary | 100% | 16473.03 | 180 / 180 | 98% | 15.87 | 423 / 430 |
adrenal gland | 100% | 8098.12 | 258 / 258 | 98% | 18.89 | 226 / 230 |
kidney | 100% | 11251.96 | 89 / 89 | 98% | 31.21 | 884 / 901 |
brain | 96% | 6353.37 | 2544 / 2642 | 99% | 18.40 | 698 / 705 |
pancreas | 96% | 3298.84 | 316 / 328 | 98% | 19.05 | 175 / 178 |
bladder | 100% | 8296.57 | 21 / 21 | 92% | 15.61 | 464 / 504 |
uterus | 100% | 12501.62 | 170 / 170 | 92% | 16.95 | 422 / 459 |
lung | 99% | 7226.16 | 575 / 578 | 89% | 11.83 | 1028 / 1155 |
intestine | 99% | 7631.81 | 961 / 966 | 82% | 9.06 | 432 / 527 |
stomach | 97% | 4567.84 | 347 / 359 | 85% | 8.98 | 242 / 286 |
esophagus | 98% | 6877.14 | 1422 / 1445 | 76% | 9.67 | 139 / 183 |
skin | 98% | 4330.86 | 1777 / 1809 | 71% | 8.43 | 337 / 472 |
ureter | 0% | 0 | 0 / 0 | 100% | 14.70 | 1 / 1 |
blood vessel | 100% | 7910.90 | 1331 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 7658.99 | 240 / 241 | 0% | 0 | 0 / 0 |
adipose | 99% | 6834.55 | 1196 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 12.02 | 27 / 29 |
heart | 91% | 3407.38 | 780 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 73% | 6.34 | 33 / 45 |
liver | 24% | 489.89 | 54 / 226 | 46% | 6.22 | 187 / 406 |
eye | 0% | 0 | 0 / 0 | 48% | 4.35 | 38 / 80 |
peripheral blood | 29% | 846.02 | 266 / 929 | 0% | 0 | 0 / 0 |
muscle | 19% | 400.02 | 154 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0046872 | Molecular function | metal ion binding |
Gene name | ZNF83 |
Protein name | ZNF83 protein Zinc finger protein 83 isoform a Zinc finger protein 83 (Zinc finger protein 816B) (Zinc finger protein HPF1) Alternative protein ZNF83 (Zinc finger protein 83) Zinc finger protein 83 |
Synonyms | ZNF816B |
Description | FUNCTION: May be involved in transcriptional regulation. |
Accessions | ENST00000596930.5 Q6P579 ENST00000595171.5 ENST00000706195.1 H9XFB5 ENST00000536937.6 ENST00000597597.1 [P51522-1] ENST00000601140.1 ENST00000600714.6 L0R8M2 ENST00000545872.1 [P51522-1] ENST00000687234.1 A0A994J556 A0A8I5KXN5 P51522 M0R287 M0R099 ENST00000595939.5 A0A994J5F7 A0A994J813 ENST00000601257.5 M0R3A5 A0A994J7N2 ENST00000301096.8 [P51522-1] ENST00000706197.1 ENST00000596440.5 M0R0P3 ENST00000598536.5 ENST00000597161.6 ENST00000706196.1 ENST00000706198.1 M0R1T0 ENST00000594682.6 A0A994J561 ENST00000706199.1 |