Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 4 studies | 19% ± 1% | |
brush cell | 4 studies | 31% ± 14% | |
connective tissue cell | 3 studies | 24% ± 6% |
Insufficient scRNA-seq data for expression of HOXA3 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1085.39 | 1445 / 1445 | 90% | 7.77 | 164 / 183 |
kidney | 100% | 1016.21 | 89 / 89 | 89% | 13.14 | 805 / 901 |
intestine | 100% | 1081.04 | 966 / 966 | 89% | 8.36 | 469 / 527 |
bladder | 100% | 836.00 | 21 / 21 | 81% | 5.75 | 408 / 504 |
prostate | 100% | 661.89 | 245 / 245 | 78% | 3.32 | 394 / 502 |
stomach | 86% | 615.30 | 309 / 359 | 87% | 8.53 | 250 / 286 |
uterus | 100% | 1049.44 | 170 / 170 | 71% | 4.36 | 324 / 459 |
lung | 100% | 614.80 | 576 / 578 | 70% | 4.83 | 812 / 1155 |
adrenal gland | 100% | 293.70 | 257 / 258 | 53% | 1.90 | 121 / 230 |
skin | 91% | 385.10 | 1649 / 1809 | 51% | 3.41 | 239 / 472 |
breast | 100% | 763.21 | 458 / 459 | 24% | 1.07 | 271 / 1118 |
ovary | 55% | 249.68 | 99 / 180 | 47% | 4.19 | 204 / 430 |
thymus | 87% | 217.19 | 570 / 653 | 14% | 1.65 | 86 / 605 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.97 | 1 / 1 |
adipose | 100% | 626.72 | 1202 / 1204 | 0% | 0 | 0 / 0 |
muscle | 93% | 285.56 | 750 / 803 | 0% | 0 | 0 / 0 |
spleen | 93% | 232.71 | 225 / 241 | 0% | 0 | 0 / 0 |
pancreas | 4% | 7.12 | 13 / 328 | 85% | 6.01 | 151 / 178 |
blood vessel | 83% | 732.66 | 1114 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 64% | 2.92 | 29 / 45 |
brain | 6% | 18.80 | 157 / 2642 | 20% | 1.39 | 144 / 705 |
liver | 1% | 1.86 | 3 / 226 | 21% | 1.16 | 87 / 406 |
lymph node | 0% | 0 | 0 / 0 | 17% | 0.56 | 5 / 29 |
heart | 3% | 5.51 | 25 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001525 | Biological process | angiogenesis |
GO_0001974 | Biological process | blood vessel remodeling |
GO_0060017 | Biological process | parathyroid gland development |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0048704 | Biological process | embryonic skeletal system morphogenesis |
GO_0048645 | Biological process | animal organ formation |
GO_2000648 | Biological process | positive regulation of stem cell proliferation |
GO_0030878 | Biological process | thyroid gland development |
GO_0072089 | Biological process | stem cell proliferation |
GO_0010159 | Biological process | specification of animal organ position |
GO_0021615 | Biological process | glossopharyngeal nerve morphogenesis |
GO_0048538 | Biological process | thymus development |
GO_0009952 | Biological process | anterior/posterior pattern specification |
GO_0010467 | Biological process | gene expression |
GO_0051216 | Biological process | cartilage development |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0005515 | Molecular function | protein binding |
GO_0071837 | Molecular function | HMG box domain binding |
Gene name | HOXA3 |
Protein name | Homeobox protein Hox-A3 (Homeobox protein Hox-1E) Homeobox A3 Homeo box A3 (cDNA FLJ36881 fis, clone BGGI12001247, highly similar to HOMEOBOX PROTEIN HOX-A3) |
Synonyms | tcag7.183 HOX1E |
Description | FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. |
Accessions | ENST00000317201.7 ENST00000522788.5 A4D182 O43365 ENST00000612286.5 ENST00000522456.1 F2Z3A4 ENST00000396352.8 E5RIJ8 |