Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 25 studies | 31% ± 13% | |
astrocyte | 13 studies | 36% ± 16% | |
oligodendrocyte precursor cell | 12 studies | 37% ± 17% | |
macrophage | 12 studies | 28% ± 13% | |
microglial cell | 12 studies | 33% ± 11% | |
GABAergic neuron | 11 studies | 42% ± 23% | |
glutamatergic neuron | 11 studies | 45% ± 25% | |
oligodendrocyte | 11 studies | 40% ± 13% | |
fibroblast | 10 studies | 29% ± 9% | |
pericyte | 9 studies | 30% ± 13% | |
adipocyte | 9 studies | 47% ± 12% | |
endothelial cell of lymphatic vessel | 8 studies | 37% ± 13% | |
epithelial cell | 7 studies | 35% ± 14% | |
dendritic cell | 7 studies | 22% ± 4% | |
smooth muscle cell | 7 studies | 27% ± 8% | |
neuron | 6 studies | 43% ± 19% | |
interneuron | 6 studies | 51% ± 21% | |
mast cell | 6 studies | 21% ± 4% | |
ciliated cell | 6 studies | 22% ± 6% | |
monocyte | 6 studies | 27% ± 8% | |
natural killer cell | 6 studies | 23% ± 6% | |
type I pneumocyte | 6 studies | 34% ± 12% | |
cardiac muscle cell | 5 studies | 33% ± 6% | |
myeloid cell | 5 studies | 22% ± 4% | |
T cell | 5 studies | 25% ± 6% | |
club cell | 5 studies | 29% ± 11% | |
type II pneumocyte | 5 studies | 27% ± 8% | |
basal cell | 5 studies | 34% ± 19% | |
CD4-positive, alpha-beta T cell | 4 studies | 20% ± 4% | |
granule cell | 4 studies | 31% ± 8% | |
mesothelial cell | 4 studies | 26% ± 7% | |
lymphocyte | 4 studies | 29% ± 10% | |
amacrine cell | 4 studies | 28% ± 8% | |
retina horizontal cell | 4 studies | 26% ± 9% | |
retinal rod cell | 4 studies | 28% ± 4% | |
endothelial cell of vascular tree | 4 studies | 31% ± 16% | |
CD16-negative, CD56-bright natural killer cell, human | 3 studies | 19% ± 4% | |
GABAergic interneuron | 3 studies | 35% ± 5% | |
glial cell | 3 studies | 25% ± 7% | |
plasma cell | 3 studies | 24% ± 4% | |
mucosal invariant T cell | 3 studies | 21% ± 2% | |
vein endothelial cell | 3 studies | 35% ± 22% | |
GABAergic amacrine cell | 3 studies | 28% ± 8% | |
Mueller cell | 3 studies | 27% ± 5% | |
glycinergic amacrine cell | 3 studies | 28% ± 3% | |
retinal cone cell | 3 studies | 22% ± 6% | |
retinal ganglion cell | 3 studies | 24% ± 9% | |
CD8-positive, alpha-beta T cell | 3 studies | 19% ± 3% | |
hepatocyte | 3 studies | 47% ± 21% | |
abnormal cell | 3 studies | 32% ± 15% | |
connective tissue cell | 3 studies | 20% ± 4% | |
ependymal cell | 3 studies | 36% ± 15% | |
B cell | 3 studies | 26% ± 8% | |
alveolar macrophage | 3 studies | 31% ± 9% | |
respiratory goblet cell | 3 studies | 34% ± 13% | |
goblet cell | 3 studies | 45% ± 30% | |
mural cell | 3 studies | 32% ± 11% | |
mucus secreting cell | 3 studies | 28% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3804.62 | 1445 / 1445 | 100% | 36.98 | 183 / 183 |
prostate | 100% | 4257.75 | 245 / 245 | 100% | 36.38 | 502 / 502 |
lung | 100% | 4542.92 | 578 / 578 | 100% | 32.69 | 1154 / 1155 |
breast | 100% | 5687.11 | 459 / 459 | 100% | 40.84 | 1117 / 1118 |
stomach | 100% | 3338.57 | 359 / 359 | 100% | 27.75 | 285 / 286 |
intestine | 100% | 4246.18 | 966 / 966 | 100% | 27.34 | 525 / 527 |
ovary | 100% | 4915.36 | 180 / 180 | 100% | 30.71 | 428 / 430 |
brain | 99% | 3728.24 | 2628 / 2642 | 100% | 34.42 | 705 / 705 |
thymus | 100% | 4724.07 | 653 / 653 | 99% | 27.92 | 599 / 605 |
bladder | 100% | 4476.29 | 21 / 21 | 99% | 27.51 | 499 / 504 |
uterus | 100% | 5502.05 | 170 / 170 | 99% | 32.10 | 454 / 459 |
pancreas | 100% | 2514.10 | 328 / 328 | 99% | 24.32 | 176 / 178 |
skin | 100% | 4938.14 | 1809 / 1809 | 99% | 34.81 | 465 / 472 |
kidney | 100% | 2845.56 | 89 / 89 | 98% | 60.13 | 884 / 901 |
adrenal gland | 100% | 3022.08 | 258 / 258 | 95% | 17.62 | 218 / 230 |
liver | 100% | 1931.74 | 226 / 226 | 79% | 10.70 | 319 / 406 |
adipose | 100% | 5453.27 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4438.41 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 5961.71 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3893.26 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 29.80 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 11.55 | 1 / 1 |
heart | 99% | 3006.15 | 849 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 19.67 | 28 / 29 |
eye | 0% | 0 | 0 / 0 | 93% | 18.34 | 74 / 80 |
peripheral blood | 83% | 2301.04 | 771 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007283 | Biological process | spermatogenesis |
GO_0007141 | Biological process | male meiosis I |
GO_0030154 | Biological process | cell differentiation |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0043565 | Molecular function | sequence-specific DNA binding |
Gene name | FOXJ3 |
Protein name | Forkhead box protein J3 Forkhead box J3 |
Synonyms | KIAA1041 hCG_21708 |
Description | FUNCTION: Transcriptional activator of MEF2C involved in the regulation of adult muscle fiber type identity and skeletal muscle regeneration (By similarity). Plays an important role in spermatogenesis (By similarity). Required for the survival of spermatogonia and participates in spermatocyte meiosis (By similarity). . |
Accessions | Q9UPW0 ENST00000361776.5 [Q9UPW0-2] ENST00000454417.1 H7C1Y6 ENST00000361346.6 [Q9UPW0-1] ENST00000372571.5 F6VXT0 ENST00000545068.5 [Q9UPW0-1] ENST00000372572.5 [Q9UPW0-1] ENST00000372573.5 [Q9UPW0-1] ENST00000422278.1 ENST00000445886.5 C9JVP0 C9JXI1 |