HOXB3 | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of HOXB3 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
intestine	100%	4853.32	966 / 966	90%	13.54	476 / 527
esophagus	100%	3354.72	1440 / 1445	85%	9.28	156 / 183
bladder	100%	1434.67	21 / 21	79%	11.40	399 / 504
kidney	100%	4260.19	89 / 89	79%	7.72	713 / 901
uterus	100%	2125.84	170 / 170	75%	12.47	346 / 459
adrenal gland	99%	1437.05	255 / 258	71%	3.97	164 / 230
breast	100%	2726.92	458 / 459	70%	12.36	786 / 1118
stomach	91%	2138.84	328 / 359	78%	8.92	223 / 286
lung	99%	1800.00	574 / 578	67%	6.75	779 / 1155
skin	92%	923.08	1664 / 1809	49%	3.23	232 / 472
pancreas	33%	195.57	108 / 328	89%	11.86	158 / 178
prostate	98%	1331.02	240 / 245	22%	1.09	112 / 502
spleen	100%	2364.53	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	10.21	1 / 1
adipose	100%	2309.75	1198 / 1204	0%	0	0 / 0
ovary	16%	129.71	28 / 180	83%	13.33	355 / 430
thymus	82%	656.69	537 / 653	1%	0.08	8 / 605
blood vessel	61%	882.33	817 / 1335	0%	0	0 / 0
heart	46%	303.53	395 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	38%	3.61	17 / 45
muscle	34%	177.89	272 / 803	0%	0	0 / 0
liver	25%	144.93	56 / 226	8%	0.66	32 / 406
brain	6%	68.27	157 / 2642	19%	2.47	137 / 705
peripheral blood	19%	215.74	176 / 929	0%	0	0 / 0
lymph node	0%	0	0 / 0	10%	0.42	3 / 29
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0001525	Biological process	angiogenesis
GO_0002244	Biological process	hematopoietic progenitor cell differentiation
GO_0006357	Biological process	regulation of transcription by RNA polymerase II
GO_0048704	Biological process	embryonic skeletal system morphogenesis
GO_0030878	Biological process	thyroid gland development
GO_0021546	Biological process	rhombomere development
GO_0000122	Biological process	negative regulation of transcription by RNA polymerase II
GO_0021615	Biological process	glossopharyngeal nerve morphogenesis
GO_0060216	Biological process	definitive hemopoiesis
GO_0060324	Biological process	face development
GO_0009952	Biological process	anterior/posterior pattern specification
GO_0050767	Biological process	regulation of neurogenesis
GO_0051216	Biological process	cartilage development
GO_0045944	Biological process	positive regulation of transcription by RNA polymerase II
GO_0005654	Cellular component	nucleoplasm
GO_0000785	Cellular component	chromatin
GO_0005634	Cellular component	nucleus
GO_0000978	Molecular function	RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO_0001228	Molecular function	DNA-binding transcription activator activity, RNA polymerase II-specific
GO_0000981	Molecular function	DNA-binding transcription factor activity, RNA polymerase II-specific

Gene name	HOXB3
Protein name	Homeobox B3 Homeobox protein Hox-B3 (Homeobox protein Hox-2.7) (Homeobox protein Hox-2G)
Synonyms	HOX2G
Description	FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. .
Accessions	ENST00000489475.5 [P14651-2] F8VXG0 ENST00000490677.1 F8W1L2 ENST00000471459.1 ENST00000465120.3 ENST00000476342.1 [P14651-1] ENST00000472863.5 [P14651-2] ENST00000311626.8 [P14651-1] ENST00000460160.5 [P14651-3] C9J2I3 P14651 ENST00000498678.6 [P14651-1] ENST00000470495.1 [P14651-1]

HOXB3 report