Insufficient scRNA-seq data for expression of HOXC6 at single-cell level.
Insufficient scRNA-seq data for expression of HOXC6 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 1238.94 | 457 / 459 | 97% | 12.60 | 1082 / 1118 |
skin | 100% | 1857.54 | 1808 / 1809 | 96% | 12.08 | 453 / 472 |
kidney | 100% | 1481.83 | 89 / 89 | 95% | 9.49 | 855 / 901 |
adrenal gland | 100% | 955.84 | 257 / 258 | 94% | 35.71 | 216 / 230 |
ovary | 100% | 2213.29 | 180 / 180 | 64% | 4.71 | 274 / 430 |
uterus | 76% | 771.05 | 130 / 170 | 68% | 6.31 | 310 / 459 |
prostate | 20% | 71.27 | 48 / 245 | 93% | 12.74 | 465 / 502 |
esophagus | 23% | 68.31 | 328 / 1445 | 87% | 6.06 | 159 / 183 |
muscle | 99% | 830.54 | 796 / 803 | 0% | 0 | 0 / 0 |
adipose | 89% | 1178.69 | 1074 / 1204 | 0% | 0 | 0 / 0 |
pancreas | 0% | 0 | 0 / 328 | 69% | 3.94 | 122 / 178 |
tonsil | 0% | 0 | 0 / 0 | 67% | 4.88 | 30 / 45 |
bladder | 24% | 59.76 | 5 / 21 | 43% | 2.97 | 215 / 504 |
lung | 8% | 23.88 | 44 / 578 | 55% | 3.84 | 637 / 1155 |
intestine | 27% | 261.20 | 256 / 966 | 36% | 2.53 | 188 / 527 |
blood vessel | 60% | 844.62 | 802 / 1335 | 0% | 0 | 0 / 0 |
stomach | 8% | 33.12 | 27 / 359 | 44% | 2.77 | 127 / 286 |
lymph node | 0% | 0 | 0 / 0 | 48% | 1.57 | 14 / 29 |
brain | 1% | 3.82 | 29 / 2642 | 19% | 1.13 | 132 / 705 |
thymus | 10% | 26.52 | 63 / 653 | 3% | 0.54 | 18 / 605 |
liver | 0% | 0 | 0 / 226 | 9% | 0.50 | 38 / 406 |
eye | 0% | 0 | 0 / 0 | 8% | 0.30 | 6 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0048706 | Biological process | embryonic skeletal system development |
GO_0009952 | Biological process | anterior/posterior pattern specification |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | HOXC6 |
Protein name | Homeobox C6 HOXC6 protein Homeobox protein Hox-C6 (Homeobox protein CP25) (Homeobox protein HHO.C8) (Homeobox protein Hox-3C) |
Synonyms | HOX3C |
Description | FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. |
Accessions | D6RBH4 ENST00000504315.1 ENST00000509328.1 Q6IB50 P09630 ENST00000243108.5 [P09630-1] D6RC34 ENST00000394331.3 [P09630-2] |