Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 23% ± 9% | |
GABAergic neuron | 3 studies | 24% ± 7% | |
glutamatergic neuron | 3 studies | 30% ± 8% | |
memory B cell | 3 studies | 21% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 20% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 2218.62 | 21 / 21 | 100% | 24.74 | 504 / 504 |
esophagus | 100% | 2235.50 | 1445 / 1445 | 100% | 27.41 | 183 / 183 |
intestine | 100% | 2486.35 | 966 / 966 | 100% | 29.80 | 527 / 527 |
prostate | 100% | 1976.78 | 245 / 245 | 100% | 22.16 | 502 / 502 |
skin | 100% | 2654.84 | 1809 / 1809 | 100% | 26.33 | 472 / 472 |
stomach | 100% | 1705.16 | 359 / 359 | 100% | 28.00 | 286 / 286 |
breast | 100% | 2355.35 | 459 / 459 | 100% | 32.86 | 1117 / 1118 |
kidney | 100% | 2872.54 | 89 / 89 | 100% | 30.74 | 900 / 901 |
brain | 100% | 1848.17 | 2638 / 2642 | 100% | 23.25 | 705 / 705 |
lung | 100% | 1987.04 | 577 / 578 | 100% | 23.64 | 1155 / 1155 |
uterus | 100% | 2518.53 | 170 / 170 | 100% | 23.65 | 458 / 459 |
ovary | 100% | 2227.73 | 180 / 180 | 100% | 20.51 | 429 / 430 |
pancreas | 99% | 1145.54 | 326 / 328 | 100% | 20.92 | 178 / 178 |
thymus | 100% | 2080.68 | 653 / 653 | 99% | 22.55 | 601 / 605 |
adrenal gland | 100% | 1635.48 | 258 / 258 | 99% | 24.77 | 227 / 230 |
liver | 97% | 641.55 | 220 / 226 | 87% | 9.44 | 355 / 406 |
adipose | 100% | 2449.45 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2147.20 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 19.35 | 29 / 29 |
spleen | 100% | 2125.33 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 23.24 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 14.11 | 1 / 1 |
muscle | 100% | 1398.75 | 801 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 16.90 | 79 / 80 |
heart | 98% | 1080.23 | 848 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 90% | 1085.68 | 837 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006366 | Biological process | transcription by RNA polymerase II |
GO_0045165 | Biological process | cell fate commitment |
GO_0032259 | Biological process | methylation |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0035097 | Cellular component | histone methyltransferase complex |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0008168 | Molecular function | methyltransferase activity |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_1990226 | Molecular function | histone methyltransferase binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | PRDM4 |
Protein name | PR/SET domain 4 PR domain zinc finger protein 4 (EC 2.1.1.-) (PR domain-containing protein 4) PRDM4 protein |
Synonyms | PFM1 |
Description | FUNCTION: May function as a transcription factor involved in cell differentiation. |
Accessions | ENST00000550659.1 ENST00000550376.5 ENST00000547188.1 H0YIF6 Q6NUK0 ENST00000228437.10 Q9UKN5 F8VZQ2 F8VRG2 |