Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell of lymphatic vessel | 25 studies | 49% ± 20% | |
endothelial cell | 23 studies | 32% ± 13% | |
astrocyte | 11 studies | 31% ± 15% | |
endothelial cell of vascular tree | 6 studies | 37% ± 27% | |
capillary endothelial cell | 6 studies | 24% ± 5% | |
vein endothelial cell | 5 studies | 32% ± 20% | |
oligodendrocyte precursor cell | 5 studies | 31% ± 9% | |
precursor B cell | 4 studies | 28% ± 2% | |
epithelial cell | 4 studies | 28% ± 4% | |
ciliated cell | 4 studies | 19% ± 2% | |
glutamatergic neuron | 4 studies | 51% ± 21% | |
pro-B cell | 3 studies | 36% ± 7% | |
neuron | 3 studies | 34% ± 5% | |
basal cell | 3 studies | 48% ± 29% | |
hepatocyte | 3 studies | 39% ± 29% | |
GABAergic neuron | 3 studies | 48% ± 11% | |
ependymal cell | 3 studies | 31% ± 19% | |
interneuron | 3 studies | 35% ± 20% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 6 studies | 33% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 459.33 | 180 / 180 | 100% | 14.31 | 430 / 430 |
esophagus | 100% | 667.03 | 1444 / 1445 | 100% | 13.82 | 183 / 183 |
breast | 100% | 1167.41 | 459 / 459 | 100% | 19.24 | 1116 / 1118 |
lung | 100% | 585.06 | 576 / 578 | 100% | 15.52 | 1151 / 1155 |
intestine | 100% | 691.92 | 966 / 966 | 99% | 10.94 | 520 / 527 |
prostate | 100% | 504.20 | 245 / 245 | 99% | 10.18 | 495 / 502 |
uterus | 100% | 1112.11 | 170 / 170 | 98% | 15.57 | 452 / 459 |
thymus | 100% | 794.49 | 653 / 653 | 98% | 10.60 | 595 / 605 |
stomach | 99% | 456.93 | 356 / 359 | 99% | 9.78 | 282 / 286 |
brain | 98% | 484.69 | 2582 / 2642 | 100% | 29.91 | 703 / 705 |
pancreas | 98% | 376.51 | 323 / 328 | 99% | 10.78 | 176 / 178 |
bladder | 100% | 717.00 | 21 / 21 | 97% | 11.13 | 490 / 504 |
kidney | 100% | 431.78 | 89 / 89 | 96% | 9.90 | 865 / 901 |
adrenal gland | 95% | 321.30 | 245 / 258 | 87% | 6.08 | 199 / 230 |
liver | 99% | 461.67 | 223 / 226 | 83% | 6.11 | 335 / 406 |
skin | 100% | 966.60 | 1809 / 1809 | 67% | 4.80 | 317 / 472 |
adipose | 100% | 969.94 | 1204 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 705.04 | 803 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 20.18 | 45 / 45 |
blood vessel | 100% | 553.39 | 1334 / 1335 | 0% | 0 | 0 / 0 |
spleen | 99% | 417.62 | 239 / 241 | 0% | 0 | 0 / 0 |
heart | 90% | 258.79 | 774 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 69% | 7.47 | 20 / 29 |
eye | 0% | 0 | 0 / 0 | 44% | 1.89 | 35 / 80 |
peripheral blood | 25% | 199.65 | 234 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006366 | Biological process | transcription by RNA polymerase II |
GO_0003161 | Biological process | cardiac conduction system development |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0001657 | Biological process | ureteric bud development |
GO_0031053 | Biological process | primary miRNA processing |
GO_0006954 | Biological process | inflammatory response |
GO_0002051 | Biological process | osteoblast fate commitment |
GO_0000165 | Biological process | MAPK cascade |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0007165 | Biological process | signal transduction |
GO_0010628 | Biological process | positive regulation of gene expression |
GO_0051148 | Biological process | negative regulation of muscle cell differentiation |
GO_0007276 | Biological process | gamete generation |
GO_1903672 | Biological process | positive regulation of sprouting angiogenesis |
GO_0045669 | Biological process | positive regulation of osteoblast differentiation |
GO_0030509 | Biological process | BMP signaling pathway |
GO_0060038 | Biological process | cardiac muscle cell proliferation |
GO_0006351 | Biological process | DNA-templated transcription |
GO_0060395 | Biological process | SMAD protein signal transduction |
GO_0009880 | Biological process | embryonic pattern specification |
GO_0001710 | Biological process | mesodermal cell fate commitment |
GO_0030154 | Biological process | cell differentiation |
GO_1902895 | Biological process | positive regulation of miRNA transcription |
GO_0009653 | Biological process | anatomical structure morphogenesis |
GO_0030902 | Biological process | hindbrain development |
GO_0042592 | Biological process | homeostatic process |
GO_0001503 | Biological process | ossification |
GO_0060348 | Biological process | bone development |
GO_0007179 | Biological process | transforming growth factor beta receptor signaling pathway |
GO_0051216 | Biological process | cartilage development |
GO_0071407 | Biological process | cellular response to organic cyclic compound |
GO_0061036 | Biological process | positive regulation of cartilage development |
GO_0030901 | Biological process | midbrain development |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0071141 | Cellular component | SMAD protein complex |
GO_0016020 | Cellular component | membrane |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005637 | Cellular component | nuclear inner membrane |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0071144 | Cellular component | heteromeric SMAD protein complex |
GO_0000785 | Cellular component | chromatin |
GO_0071142 | Cellular component | homomeric SMAD protein complex |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0019901 | Molecular function | protein kinase binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0031625 | Molecular function | ubiquitin protein ligase binding |
GO_0070410 | Molecular function | co-SMAD binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0046872 | Molecular function | metal ion binding |
GO_0017151 | Molecular function | DEAD/H-box RNA helicase binding |
GO_0070411 | Molecular function | I-SMAD binding |
GO_0070878 | Molecular function | primary miRNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SMAD1 |
Protein name | Mothers against decapentaplegic homolog 1 (MAD homolog 1) (Mothers against DPP homolog 1) (JV4-1) (Mad-related protein 1) (SMAD family member 1) (SMAD 1) (Smad1) (hSMAD1) (Transforming growth factor-beta-signaling protein 1) (BSP-1) SMAD family member 1 |
Synonyms | BSP1 MADR1 MADH1 |
Description | FUNCTION: Transcriptional modulator that plays a role in various cellular processes, including embryonic development, cell differentiation, and tissue homeostasis . Upon BMP ligand binding to their receptors at the cell surface, is phosphorylated by activated type I BMP receptors (BMPRIs) and associates with SMAD4 to form an heteromeric complex which translocates into the nucleus acting as transcription factor . In turn, the hetero-trimeric complex recognizes cis-regulatory elements containing Smad Binding Elements (SBEs) to modulate the outcome of the signaling network . SMAD1/OAZ1/PSMB4 complex mediates the degradation of the CREBBP/EP300 repressor SNIP1. Positively regulates BMP4-induced expression of odontogenic development regulator MSX1 following IPO7-mediated nuclear import (By similarity). . |
Accessions | D6REQ3 ENST00000394092.6 [Q15797-1] ENST00000514831.1 D6RD62 ENST00000507367.1 D6RDN7 ENST00000512019.1 ENST00000503324.1 ENST00000514778.1 ENST00000302085.9 [Q15797-1] A0A1D5RMR4 D6RBH9 Q15797 ENST00000507594.1 ENST00000515385.1 [Q15797-1] D6RAY1 |