Name | Number of supported studies | Average coverage | |
---|---|---|---|
pericyte | 36 studies | 57% ± 18% | |
smooth muscle cell | 27 studies | 50% ± 20% | |
non-classical monocyte | 17 studies | 40% ± 17% | |
fibroblast | 17 studies | 28% ± 12% | |
endothelial cell | 14 studies | 33% ± 11% | |
basal cell | 11 studies | 38% ± 17% | |
endothelial cell of lymphatic vessel | 10 studies | 26% ± 8% | |
endothelial cell of artery | 8 studies | 35% ± 5% | |
epithelial cell | 8 studies | 45% ± 13% | |
ciliated cell | 8 studies | 31% ± 14% | |
secretory cell | 8 studies | 46% ± 19% | |
connective tissue cell | 7 studies | 31% ± 13% | |
type I pneumocyte | 6 studies | 23% ± 6% | |
club cell | 6 studies | 35% ± 12% | |
astrocyte | 6 studies | 29% ± 12% | |
endothelial cell of vascular tree | 6 studies | 19% ± 4% | |
monocyte | 5 studies | 23% ± 5% | |
myofibroblast cell | 5 studies | 29% ± 14% | |
Mueller cell | 5 studies | 33% ± 10% | |
neuron | 5 studies | 28% ± 11% | |
respiratory goblet cell | 4 studies | 44% ± 16% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 39% ± 12% | |
leukocyte | 4 studies | 29% ± 9% | |
abnormal cell | 3 studies | 25% ± 6% | |
neural crest cell | 3 studies | 23% ± 5% | |
luminal cell of prostate epithelium | 3 studies | 39% ± 5% | |
muscle cell | 3 studies | 36% ± 11% | |
GABAergic neuron | 3 studies | 35% ± 13% | |
glutamatergic neuron | 3 studies | 42% ± 10% | |
neural progenitor cell | 3 studies | 22% ± 8% | |
mast cell | 3 studies | 25% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 1323.71 | 244 / 245 | 97% | 54.42 | 489 / 502 |
esophagus | 99% | 792.64 | 1424 / 1445 | 98% | 66.65 | 180 / 183 |
uterus | 100% | 885.44 | 170 / 170 | 95% | 44.70 | 438 / 459 |
bladder | 95% | 980.52 | 20 / 21 | 91% | 52.97 | 458 / 504 |
brain | 90% | 748.74 | 2385 / 2642 | 93% | 47.52 | 657 / 705 |
lung | 98% | 910.51 | 568 / 578 | 82% | 23.63 | 949 / 1155 |
pancreas | 91% | 337.21 | 297 / 328 | 87% | 32.24 | 155 / 178 |
breast | 99% | 910.92 | 455 / 459 | 78% | 22.70 | 877 / 1118 |
thymus | 95% | 574.59 | 623 / 653 | 81% | 23.37 | 490 / 605 |
intestine | 95% | 666.64 | 913 / 966 | 78% | 30.83 | 413 / 527 |
kidney | 97% | 575.11 | 86 / 89 | 75% | 24.90 | 677 / 901 |
stomach | 71% | 344.84 | 256 / 359 | 86% | 35.78 | 245 / 286 |
ovary | 61% | 337.04 | 109 / 180 | 96% | 63.59 | 413 / 430 |
skin | 71% | 402.71 | 1293 / 1809 | 42% | 8.83 | 197 / 472 |
ureter | 0% | 0 | 0 / 0 | 100% | 257.81 | 1 / 1 |
blood vessel | 100% | 1977.05 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 1164.47 | 854 / 861 | 0% | 0 | 0 / 0 |
adipose | 97% | 740.72 | 1168 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 23.15 | 77 / 80 |
spleen | 96% | 549.31 | 231 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 93% | 24.66 | 42 / 45 |
liver | 34% | 108.74 | 76 / 226 | 44% | 11.22 | 178 / 406 |
adrenal gland | 28% | 106.50 | 72 / 258 | 48% | 12.07 | 110 / 230 |
muscle | 53% | 168.60 | 427 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 28% | 130.53 | 260 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 14% | 2.64 | 4 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007399 | Biological process | nervous system development |
GO_0030154 | Biological process | cell differentiation |
GO_0009952 | Biological process | anterior/posterior pattern specification |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0046983 | Molecular function | protein dimerization activity |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | HES4 |
Protein name | Transcription factor HES-4 (hHES4) (Class B basic helix-loop-helix protein 42) (bHLHb42) (Hairy and enhancer of split 4) (bHLH factor Hes4) Hes family bHLH transcription factor 4 |
Synonyms | BHLHB42 |
Description | FUNCTION: Transcriptional repressor. Binds DNA on N-box motifs: 5'-CACNAG-3' (By similarity). . |
Accessions | D6REB3 ENST00000428771.6 ENST00000484667.2 Q9HCC6 ENST00000304952.11 E9PB28 |