Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 21 studies | 31% ± 13% | |
ciliated cell | 19 studies | 41% ± 16% | |
fibroblast | 17 studies | 23% ± 7% | |
oligodendrocyte | 15 studies | 46% ± 17% | |
oligodendrocyte precursor cell | 12 studies | 35% ± 16% | |
astrocyte | 11 studies | 32% ± 15% | |
epithelial cell | 10 studies | 41% ± 18% | |
adipocyte | 10 studies | 28% ± 6% | |
neuron | 9 studies | 37% ± 21% | |
endothelial cell of lymphatic vessel | 8 studies | 20% ± 4% | |
basal cell | 8 studies | 35% ± 15% | |
GABAergic neuron | 8 studies | 41% ± 21% | |
glutamatergic neuron | 8 studies | 43% ± 25% | |
macrophage | 8 studies | 24% ± 7% | |
microglial cell | 8 studies | 25% ± 8% | |
pericyte | 8 studies | 19% ± 4% | |
smooth muscle cell | 7 studies | 19% ± 2% | |
abnormal cell | 6 studies | 30% ± 11% | |
interneuron | 6 studies | 39% ± 20% | |
myofibroblast cell | 6 studies | 23% ± 4% | |
goblet cell | 6 studies | 35% ± 18% | |
club cell | 5 studies | 25% ± 10% | |
respiratory goblet cell | 5 studies | 28% ± 3% | |
capillary endothelial cell | 5 studies | 20% ± 4% | |
progenitor cell | 5 studies | 22% ± 5% | |
enteroendocrine cell | 5 studies | 40% ± 16% | |
brush cell | 5 studies | 34% ± 17% | |
mucus secreting cell | 5 studies | 33% ± 9% | |
hepatocyte | 5 studies | 60% ± 25% | |
connective tissue cell | 5 studies | 21% ± 5% | |
plasmacytoid dendritic cell | 5 studies | 21% ± 7% | |
secretory cell | 4 studies | 25% ± 6% | |
pancreatic A cell | 4 studies | 45% ± 24% | |
B cell | 4 studies | 20% ± 2% | |
classical monocyte | 4 studies | 21% ± 5% | |
myeloid cell | 4 studies | 22% ± 5% | |
Mueller cell | 4 studies | 19% ± 4% | |
intestinal crypt stem cell | 4 studies | 23% ± 0% | |
hematopoietic stem cell | 4 studies | 25% ± 3% | |
hematopoietic precursor cell | 3 studies | 27% ± 14% | |
ionocyte | 3 studies | 36% ± 8% | |
pancreatic D cell | 3 studies | 53% ± 25% | |
type B pancreatic cell | 3 studies | 47% ± 19% | |
CD4-positive, alpha-beta T cell | 3 studies | 22% ± 1% | |
neural crest cell | 3 studies | 19% ± 2% | |
amacrine cell | 3 studies | 24% ± 8% | |
retinal bipolar neuron | 3 studies | 24% ± 3% | |
GABAergic interneuron | 3 studies | 22% ± 4% | |
granule cell | 3 studies | 21% ± 3% | |
squamous epithelial cell | 3 studies | 39% ± 23% | |
retinal cone cell | 3 studies | 28% ± 9% | |
retinal pigment epithelial cell | 3 studies | 32% ± 12% | |
lymphocyte | 3 studies | 22% ± 5% | |
luminal hormone-sensing cell of mammary gland | 3 studies | 26% ± 3% | |
monocyte | 3 studies | 18% ± 2% | |
chondrocyte | 3 studies | 38% ± 14% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 15 studies | 37% ± 20% | |
lung | 8 studies | 27% ± 9% | |
liver | 5 studies | 31% ± 15% | |
intestine | 4 studies | 23% ± 9% | |
adipose | 4 studies | 23% ± 8% | |
pancreas | 3 studies | 48% ± 18% | |
peripheral blood | 3 studies | 25% ± 6% | |
eye | 3 studies | 31% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 8237.48 | 459 / 459 | 100% | 71.29 | 1118 / 1118 |
esophagus | 100% | 6175.48 | 1445 / 1445 | 100% | 52.88 | 183 / 183 |
prostate | 100% | 10432.33 | 245 / 245 | 100% | 72.52 | 502 / 502 |
stomach | 100% | 7170.26 | 359 / 359 | 99% | 51.30 | 284 / 286 |
brain | 100% | 5329.79 | 2638 / 2642 | 99% | 49.27 | 699 / 705 |
pancreas | 100% | 6687.16 | 328 / 328 | 99% | 37.78 | 176 / 178 |
intestine | 100% | 6731.73 | 966 / 966 | 99% | 50.52 | 521 / 527 |
liver | 100% | 12067.79 | 226 / 226 | 99% | 32.82 | 401 / 406 |
skin | 100% | 8928.99 | 1809 / 1809 | 99% | 63.10 | 466 / 472 |
thymus | 100% | 5188.76 | 653 / 653 | 98% | 25.07 | 595 / 605 |
adrenal gland | 100% | 8168.66 | 258 / 258 | 98% | 27.86 | 225 / 230 |
ovary | 100% | 6117.83 | 180 / 180 | 97% | 26.40 | 419 / 430 |
uterus | 100% | 6673.86 | 170 / 170 | 97% | 25.65 | 447 / 459 |
kidney | 100% | 4300.83 | 89 / 89 | 97% | 27.97 | 877 / 901 |
lung | 100% | 4949.79 | 577 / 578 | 97% | 31.36 | 1124 / 1155 |
bladder | 100% | 5596.38 | 21 / 21 | 97% | 30.30 | 487 / 504 |
adipose | 100% | 5270.15 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 5828.94 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.18 | 1 / 1 |
blood vessel | 100% | 4439.34 | 1331 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 2723.93 | 793 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 25.60 | 44 / 45 |
heart | 97% | 2960.38 | 837 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 31.73 | 77 / 80 |
lymph node | 0% | 0 | 0 / 0 | 83% | 13.38 | 24 / 29 |
peripheral blood | 63% | 2372.25 | 587 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0046872 | Molecular function | metal ion binding |
Gene name | ZKSCAN1 |
Protein name | Zinc finger protein with KRAB and SCAN domains 1 (Zinc finger protein 139) (Zinc finger protein 36) (Zinc finger protein KOX18) ZKSCAN1 protein Zinc finger with KRAB and SCAN domains 1 (cDNA FLJ34152 fis, clone FCBBF3012901, highly similar to Zinc finger with KRAB and SCAN domain-containing protein 1) Zinc finger with KRAB and SCAN domains 1 |
Synonyms | KOX18 ZNF36 ZNF139 |
Description | FUNCTION: May be involved in transcriptional regulation. |
Accessions | E9PC66 Q96FA2 ENST00000535170.5 ENST00000432317.1 ENST00000426572.5 ENST00000324306.11 C9JRM9 P17029 B3KRF7 ENST00000620510.1 |