Name | Number of supported studies | Average coverage | |
---|---|---|---|
GABAergic neuron | 3 studies | 25% ± 8% | |
astrocyte | 3 studies | 17% ± 1% | |
glutamatergic neuron | 3 studies | 33% ± 11% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 24% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 793.70 | 653 / 653 | 99% | 4.14 | 598 / 605 |
prostate | 100% | 572.09 | 245 / 245 | 99% | 4.00 | 496 / 502 |
breast | 100% | 496.64 | 459 / 459 | 99% | 5.28 | 1102 / 1118 |
kidney | 100% | 519.19 | 89 / 89 | 98% | 5.01 | 886 / 901 |
bladder | 100% | 459.24 | 21 / 21 | 97% | 3.71 | 488 / 504 |
pancreas | 99% | 267.60 | 326 / 328 | 97% | 3.64 | 173 / 178 |
stomach | 100% | 387.74 | 359 / 359 | 97% | 5.49 | 276 / 286 |
intestine | 100% | 492.25 | 966 / 966 | 96% | 4.24 | 508 / 527 |
lung | 100% | 544.28 | 578 / 578 | 96% | 4.54 | 1105 / 1155 |
ovary | 100% | 495.38 | 180 / 180 | 96% | 3.30 | 411 / 430 |
esophagus | 100% | 407.11 | 1445 / 1445 | 95% | 7.24 | 173 / 183 |
brain | 97% | 227.54 | 2555 / 2642 | 95% | 2.79 | 667 / 705 |
uterus | 100% | 537.84 | 170 / 170 | 88% | 3.03 | 405 / 459 |
adrenal gland | 100% | 328.77 | 258 / 258 | 87% | 2.38 | 200 / 230 |
skin | 100% | 427.15 | 1808 / 1809 | 86% | 2.79 | 404 / 472 |
liver | 97% | 200.53 | 220 / 226 | 51% | 1.21 | 208 / 406 |
adipose | 100% | 458.35 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 506.15 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.59 | 1 / 1 |
blood vessel | 100% | 376.28 | 1332 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 396.09 | 856 / 861 | 0% | 0 | 0 / 0 |
muscle | 97% | 209.11 | 780 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 2.58 | 27 / 29 |
peripheral blood | 88% | 316.31 | 818 / 929 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 87% | 2.83 | 39 / 45 |
eye | 0% | 0 | 0 / 0 | 68% | 1.53 | 54 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030154 | Biological process | cell differentiation |
GO_0031016 | Biological process | pancreas development |
GO_0010629 | Biological process | negative regulation of gene expression |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0046872 | Molecular function | metal ion binding |
GO_0000976 | Molecular function | transcription cis-regulatory region binding |
Gene name | ZNF808 |
Protein name | ZNF808 protein Zinc finger protein 808 |
Synonyms | |
Description | FUNCTION: Transcriptional repressor that targets mainly transposable elements . Primarily targets the long terminal repeat of endogenous retroviruses classified as MER11 elements which comprise subfamilies A, B and C . May silence transposable elements through the establishment of heterochromatin-associated trimethylation of 'Lys-9' of histone H3 (H3K9me3) . Can also bind to certain gene promoters and other genomic regions . Represses transcription of specific MER11 elements during differentiation toward pancreatic lineages in early pancreas development . By repressing transcription, prevents a liver gene expression program from being aberrantly activated during pancreas differentiation . . |
Accessions | C9IZE3 C9JVX0 C9J0J5 C1K3N6 ENST00000486474.5 ENST00000487863.5 [Q8N4W9-2] Q8N4W9 C9J871 ENST00000465448.5 ENST00000461321.1 ENST00000359798.9 [Q8N4W9-1] ENST00000461779.5 Q7Z749 |