Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| endothelial cell | 20 studies | 30% ± 16% | |
| B cell | 19 studies | 25% ± 9% | |
| oligodendrocyte precursor cell | 17 studies | 60% ± 19% | |
| oligodendrocyte | 16 studies | 46% ± 17% | |
| astrocyte | 13 studies | 38% ± 14% | |
| microglial cell | 13 studies | 51% ± 17% | |
| memory B cell | 12 studies | 18% ± 3% | |
| mast cell | 9 studies | 25% ± 5% | |
| naive B cell | 9 studies | 21% ± 5% | |
| GABAergic neuron | 8 studies | 28% ± 10% | |
| retinal rod cell | 8 studies | 43% ± 19% | |
| macrophage | 8 studies | 36% ± 16% | |
| neuron | 7 studies | 52% ± 23% | |
| retinal cone cell | 7 studies | 49% ± 18% | |
| ciliated cell | 7 studies | 25% ± 9% | |
| epithelial cell | 6 studies | 37% ± 12% | |
| interneuron | 6 studies | 42% ± 21% | |
| retina horizontal cell | 6 studies | 30% ± 16% | |
| Mueller cell | 6 studies | 52% ± 19% | |
| abnormal cell | 5 studies | 29% ± 13% | |
| endothelial cell of lymphatic vessel | 5 studies | 31% ± 9% | |
| goblet cell | 5 studies | 29% ± 11% | |
| glutamatergic neuron | 4 studies | 45% ± 17% | |
| glial cell | 4 studies | 44% ± 23% | |
| granule cell | 4 studies | 60% ± 25% | |
| retinal ganglion cell | 4 studies | 28% ± 9% | |
| precursor B cell | 4 studies | 23% ± 5% | |
| cardiac muscle cell | 4 studies | 19% ± 2% | |
| enteroendocrine cell | 4 studies | 26% ± 9% | |
| CD4-positive, alpha-beta T cell | 3 studies | 21% ± 2% | |
| differentiation-committed oligodendrocyte precursor | 3 studies | 59% ± 16% | |
| neural crest cell | 3 studies | 43% ± 15% | |
| pericyte | 3 studies | 39% ± 24% | |
| immature B cell | 3 studies | 28% ± 10% | |
| amacrine cell | 3 studies | 29% ± 6% | |
| vein endothelial cell | 3 studies | 31% ± 18% | |
| neural progenitor cell | 3 studies | 51% ± 23% | |
| ependymal cell | 3 studies | 39% ± 10% | |
| club cell | 3 studies | 21% ± 3% | |
| type I pneumocyte | 3 studies | 24% ± 5% | |
| basal cell | 3 studies | 24% ± 8% | |
| brush cell | 3 studies | 19% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 1578.94 | 1443 / 1445 | 100% | 11.95 | 183 / 183 |
| stomach | 100% | 1362.96 | 359 / 359 | 99% | 12.38 | 284 / 286 |
| intestine | 100% | 2422.74 | 966 / 966 | 99% | 12.51 | 523 / 527 |
| brain | 100% | 3995.60 | 2636 / 2642 | 99% | 24.26 | 698 / 705 |
| bladder | 100% | 1287.38 | 21 / 21 | 97% | 8.51 | 490 / 504 |
| pancreas | 100% | 1300.89 | 327 / 328 | 96% | 6.81 | 171 / 178 |
| lung | 100% | 2359.42 | 577 / 578 | 94% | 8.04 | 1089 / 1155 |
| breast | 100% | 1855.80 | 459 / 459 | 92% | 9.60 | 1031 / 1118 |
| thymus | 100% | 2290.40 | 653 / 653 | 89% | 4.78 | 536 / 605 |
| skin | 90% | 1855.37 | 1625 / 1809 | 97% | 11.17 | 456 / 472 |
| uterus | 99% | 1048.76 | 168 / 170 | 86% | 6.73 | 397 / 459 |
| prostate | 99% | 1413.92 | 242 / 245 | 86% | 4.39 | 433 / 502 |
| kidney | 100% | 1427.51 | 89 / 89 | 84% | 4.04 | 759 / 901 |
| ovary | 78% | 472.25 | 141 / 180 | 98% | 12.35 | 421 / 430 |
| adrenal gland | 99% | 919.66 | 256 / 258 | 67% | 3.30 | 153 / 230 |
| liver | 98% | 809.15 | 221 / 226 | 67% | 3.09 | 270 / 406 |
| adipose | 100% | 1684.78 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| muscle | 100% | 3142.66 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 2673.60 | 241 / 241 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 100% | 4.56 | 1 / 1 |
| heart | 96% | 1254.17 | 827 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 95% | 2107.07 | 881 / 929 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 93% | 9.98 | 74 / 80 |
| lymph node | 0% | 0 | 0 / 0 | 90% | 6.38 | 26 / 29 |
| tonsil | 0% | 0 | 0 / 0 | 71% | 4.03 | 32 / 45 |
| blood vessel | 62% | 418.65 | 824 / 1335 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0006366 | Biological process | transcription by RNA polymerase II |
| GO_0010468 | Biological process | regulation of gene expression |
| GO_0007605 | Biological process | sensory perception of sound |
| GO_0007628 | Biological process | adult walking behavior |
| GO_0001974 | Biological process | blood vessel remodeling |
| GO_0030540 | Biological process | female genitalia development |
| GO_0001701 | Biological process | in utero embryonic development |
| GO_0009617 | Biological process | response to bacterium |
| GO_0060411 | Biological process | cardiac septum morphogenesis |
| GO_0060173 | Biological process | limb development |
| GO_0062009 | Biological process | secondary palate development |
| GO_0043009 | Biological process | chordate embryonic development |
| GO_0060041 | Biological process | retina development in camera-type eye |
| GO_0003226 | Biological process | right ventricular compact myocardium morphogenesis |
| GO_0006338 | Biological process | chromatin remodeling |
| GO_0035116 | Biological process | embryonic hindlimb morphogenesis |
| GO_0021772 | Biological process | olfactory bulb development |
| GO_0048806 | Biological process | genitalia development |
| GO_0043584 | Biological process | nose development |
| GO_0030217 | Biological process | T cell differentiation |
| GO_0042048 | Biological process | olfactory behavior |
| GO_0021553 | Biological process | olfactory nerve development |
| GO_0048752 | Biological process | semicircular canal morphogenesis |
| GO_0060324 | Biological process | face development |
| GO_0007512 | Biological process | adult heart development |
| GO_0035909 | Biological process | aorta morphogenesis |
| GO_0008015 | Biological process | blood circulation |
| GO_0006355 | Biological process | regulation of DNA-templated transcription |
| GO_0036302 | Biological process | atrioventricular canal development |
| GO_0007417 | Biological process | central nervous system development |
| GO_0042472 | Biological process | inner ear morphogenesis |
| GO_0001501 | Biological process | skeletal system development |
| GO_0050890 | Biological process | cognition |
| GO_0060123 | Biological process | regulation of growth hormone secretion |
| GO_0010880 | Biological process | regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum |
| GO_0050767 | Biological process | regulation of neurogenesis |
| GO_0003222 | Biological process | ventricular trabecula myocardium morphogenesis |
| GO_0060429 | Biological process | epithelium development |
| GO_0006364 | Biological process | rRNA processing |
| GO_0021545 | Biological process | cranial nerve development |
| GO_0003007 | Biological process | heart morphogenesis |
| GO_0040018 | Biological process | positive regulation of multicellular organism growth |
| GO_0060384 | Biological process | innervation |
| GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
| GO_0005730 | Cellular component | nucleolus |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0000785 | Cellular component | chromatin |
| GO_0005634 | Cellular component | nucleus |
| GO_0003677 | Molecular function | DNA binding |
| GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO_0004386 | Molecular function | helicase activity |
| GO_1990841 | Molecular function | promoter-specific chromatin binding |
| GO_0042393 | Molecular function | histone binding |
| GO_0003682 | Molecular function | chromatin binding |
| GO_0005524 | Molecular function | ATP binding |
| GO_0140658 | Molecular function | ATP-dependent chromatin remodeler activity |
| GO_0005515 | Molecular function | protein binding |
| GO_0016887 | Molecular function | ATP hydrolysis activity |
| Gene name | CHD7 |
| Protein name | Chromodomain helicase DNA binding protein 7 Chromodomain-helicase-DNA-binding protein 7 (CHD-7) (EC 3.6.4.12) (ATP-dependent helicase CHD7) Alternative protein CHD7 DNA helicase (EC 3.6.4.12) |
| Synonyms | KIAA1416 |
| Description | FUNCTION: Probable transcription regulator. Maybe involved in the in 45S precursor rRNA production. . |
| Accessions | L8E8D7 A0A8V8TQJ2 ENST00000526846.1 A0A8Q3WKT9 ENST00000423902.7 [Q9P2D1-1] ENST00000700671.1 Q9P2D1 ENST00000695853.1 H0YD01 ENST00000525508.1 [Q9P2D1-2] E9PP20 H0YDC1 ENST00000527825.1 ENST00000527900.1 ENST00000524602.5 [Q9P2D1-4] |