VAX1 | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of VAX1 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	77%	170.03	2024 / 2642	15%	0.53	107 / 705
skin	0%	0.04	3 / 1809	30%	0.84	142 / 472
esophagus	0%	0.04	2 / 1445	22%	0.62	40 / 183
uterus	0%	0	0 / 170	17%	0.59	76 / 459
lung	0%	0	0 / 578	13%	0.33	152 / 1155
bladder	0%	0	0 / 21	7%	0.18	34 / 504
pancreas	5%	1.28	15 / 328	1%	0.04	2 / 178
breast	0%	0.05	1 / 459	4%	0.11	42 / 1118
adrenal gland	0%	0	0 / 258	3%	0.13	8 / 230
intestine	0%	0.02	1 / 966	3%	0.13	14 / 527
stomach	0%	0	0 / 359	2%	0.08	7 / 286
tonsil	0%	0	0 / 0	2%	0.16	1 / 45
prostate	0%	0.08	1 / 245	2%	0.03	8 / 502
kidney	1%	0.21	1 / 89	1%	0.02	7 / 901
eye	0%	0	0 / 0	1%	0.04	1 / 80
liver	0%	0	0 / 226	1%	0.03	5 / 406
adipose	1%	0.29	11 / 1204	0%	0	0 / 0
ovary	0%	0	0 / 180	0%	0.01	2 / 430
thymus	0%	0	0 / 653	0%	0.04	2 / 605
blood vessel	0%	0.03	1 / 1335	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
heart	0%	0	0 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
muscle	0%	0	0 / 803	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0006357	Biological process	regulation of transcription by RNA polymerase II
GO_0001764	Biological process	neuron migration
GO_0000122	Biological process	negative regulation of transcription by RNA polymerase II
GO_0048708	Biological process	astrocyte differentiation
GO_0030182	Biological process	neuron differentiation
GO_0060021	Biological process	roof of mouth development
GO_0060563	Biological process	neuroepithelial cell differentiation
GO_0007417	Biological process	central nervous system development
GO_0007420	Biological process	brain development
GO_0043010	Biological process	camera-type eye development
GO_0035914	Biological process	skeletal muscle cell differentiation
GO_0007411	Biological process	axon guidance
GO_0007405	Biological process	neuroblast proliferation
GO_0007406	Biological process	negative regulation of neuroblast proliferation
GO_0005634	Cellular component	nucleus
GO_0000785	Cellular component	chromatin
GO_0000978	Molecular function	RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO_0001227	Molecular function	DNA-binding transcription repressor activity, RNA polymerase II-specific
GO_0000981	Molecular function	DNA-binding transcription factor activity, RNA polymerase II-specific
GO_1990837	Molecular function	sequence-specific double-stranded DNA binding
GO_0031490	Molecular function	chromatin DNA binding
GO_0001162	Molecular function	RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding

Gene name	VAX1
Protein name	Ventral anterior homeobox 1
Synonyms
Description	FUNCTION: Transcription factor that may function in dorsoventral specification of the forebrain. Required for axon guidance and major tract formation in the developing forebrain. May contribute to the differentiation of the neuroretina, pigmented epithelium and optic stalk (By similarity). .
Accessions	ENST00000277905.6 [Q5SQQ9-2] ENST00000369206.6 [Q5SQQ9-1] Q5SQQ9

VAX1 report