Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 6 studies | 20% ± 3% | |
basal cell | 5 studies | 23% ± 9% | |
epithelial cell of proximal tubule | 4 studies | 20% ± 5% | |
epithelial cell | 4 studies | 35% ± 18% | |
natural killer cell | 3 studies | 20% ± 4% | |
CD16-positive, CD56-dim natural killer cell, human | 3 studies | 20% ± 4% | |
CD8-positive, alpha-beta T cell | 3 studies | 25% ± 7% | |
ciliated cell | 3 studies | 18% ± 1% | |
smooth muscle cell | 3 studies | 17% ± 1% | |
pericyte | 3 studies | 17% ± 1% | |
hepatocyte | 3 studies | 41% ± 31% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 3 studies | 20% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 4697.16 | 180 / 180 | 100% | 131.70 | 430 / 430 |
uterus | 100% | 4194.09 | 170 / 170 | 100% | 112.04 | 459 / 459 |
thymus | 100% | 3764.45 | 653 / 653 | 100% | 77.88 | 604 / 605 |
kidney | 100% | 6450.91 | 89 / 89 | 100% | 103.72 | 897 / 901 |
esophagus | 100% | 4655.08 | 1445 / 1445 | 99% | 91.02 | 182 / 183 |
prostate | 100% | 5451.72 | 245 / 245 | 99% | 125.56 | 498 / 502 |
intestine | 100% | 3929.28 | 966 / 966 | 99% | 67.71 | 522 / 527 |
adrenal gland | 100% | 3582.73 | 258 / 258 | 99% | 74.16 | 227 / 230 |
liver | 99% | 8119.14 | 223 / 226 | 100% | 125.81 | 406 / 406 |
breast | 100% | 4551.98 | 459 / 459 | 99% | 106.97 | 1103 / 1118 |
pancreas | 98% | 1649.77 | 323 / 328 | 100% | 74.86 | 178 / 178 |
lung | 100% | 3249.11 | 577 / 578 | 98% | 80.80 | 1132 / 1155 |
bladder | 100% | 4963.14 | 21 / 21 | 98% | 81.76 | 493 / 504 |
skin | 100% | 4945.02 | 1809 / 1809 | 97% | 58.84 | 459 / 472 |
stomach | 99% | 2673.61 | 357 / 359 | 97% | 74.83 | 276 / 286 |
brain | 97% | 1526.76 | 2552 / 2642 | 75% | 29.52 | 532 / 705 |
adipose | 100% | 5244.11 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4973.84 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 42.26 | 80 / 80 |
spleen | 100% | 3890.32 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 90.91 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 83.77 | 1 / 1 |
heart | 100% | 2913.58 | 858 / 861 | 0% | 0 | 0 / 0 |
muscle | 99% | 4193.08 | 797 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 34.93 | 28 / 29 |
peripheral blood | 83% | 1524.08 | 773 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0016607 | Cellular component | nuclear speck |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0046872 | Molecular function | metal ion binding |
Gene name | SLC2A4RG |
Protein name | SLC2A4 regulator (GLUT4 enhancer factor) (GEF) (Huntington disease gene regulatory region-binding protein 1) (HDBP-1) |
Synonyms | HDBP1 |
Description | FUNCTION: Transcription factor involved in SLC2A4 and HD gene transactivation. Binds to the consensus sequence 5'-GCCGGCG-3'. . |
Accessions | Q9NR83 ENST00000266077.5 [Q9NR83-1] |