Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 21 studies | 26% ± 10% | |
ciliated cell | 9 studies | 29% ± 12% | |
smooth muscle cell | 8 studies | 20% ± 5% | |
epithelial cell | 8 studies | 31% ± 13% | |
pericyte | 6 studies | 18% ± 2% | |
vein endothelial cell | 6 studies | 19% ± 2% | |
glutamatergic neuron | 5 studies | 33% ± 15% | |
basal cell | 5 studies | 25% ± 5% | |
fibroblast | 5 studies | 25% ± 9% | |
macrophage | 5 studies | 20% ± 4% | |
capillary endothelial cell | 4 studies | 22% ± 6% | |
neuron | 4 studies | 26% ± 7% | |
endothelial cell of artery | 4 studies | 17% ± 2% | |
retinal ganglion cell | 4 studies | 80% ± 20% | |
GABAergic neuron | 4 studies | 31% ± 9% | |
endothelial cell of lymphatic vessel | 3 studies | 21% ± 4% | |
glomerular endothelial cell | 3 studies | 19% ± 0% | |
podocyte | 3 studies | 39% ± 7% | |
retinal bipolar neuron | 3 studies | 23% ± 5% | |
kidney loop of Henle epithelial cell | 3 studies | 24% ± 5% | |
retina horizontal cell | 3 studies | 20% ± 2% | |
secretory cell | 3 studies | 26% ± 4% | |
endothelial cell of vascular tree | 3 studies | 19% ± 4% | |
goblet cell | 3 studies | 18% ± 1% | |
brush cell | 3 studies | 26% ± 6% | |
interneuron | 3 studies | 36% ± 22% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 19770.70 | 1445 / 1445 | 100% | 159.09 | 183 / 183 |
kidney | 100% | 17773.26 | 89 / 89 | 100% | 259.43 | 901 / 901 |
prostate | 100% | 15855.81 | 244 / 245 | 100% | 171.36 | 501 / 502 |
uterus | 100% | 25313.74 | 170 / 170 | 99% | 164.35 | 456 / 459 |
thymus | 100% | 16741.03 | 653 / 653 | 99% | 174.92 | 601 / 605 |
skin | 100% | 18196.10 | 1808 / 1809 | 99% | 212.73 | 469 / 472 |
breast | 100% | 18361.89 | 459 / 459 | 99% | 181.58 | 1110 / 1118 |
intestine | 100% | 17818.87 | 966 / 966 | 99% | 115.88 | 520 / 527 |
bladder | 100% | 17203.76 | 21 / 21 | 99% | 122.72 | 497 / 504 |
lung | 99% | 13956.56 | 574 / 578 | 99% | 169.96 | 1146 / 1155 |
brain | 99% | 11797.97 | 2611 / 2642 | 100% | 156.49 | 702 / 705 |
stomach | 99% | 11452.35 | 357 / 359 | 99% | 111.73 | 283 / 286 |
adrenal gland | 100% | 23790.52 | 258 / 258 | 98% | 244.23 | 225 / 230 |
liver | 99% | 9718.32 | 224 / 226 | 98% | 131.07 | 398 / 406 |
ovary | 100% | 20164.58 | 180 / 180 | 92% | 79.18 | 396 / 430 |
pancreas | 71% | 3945.48 | 232 / 328 | 99% | 149.01 | 176 / 178 |
adipose | 100% | 23822.67 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 23862.79 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 120332.88 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 15081.68 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 198.60 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 48.28 | 1 / 1 |
heart | 99% | 36162.99 | 852 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 183.10 | 79 / 80 |
lymph node | 0% | 0 | 0 / 0 | 93% | 80.18 | 27 / 29 |
peripheral blood | 40% | 3882.75 | 375 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0009653 | Biological process | anatomical structure morphogenesis |
GO_0008203 | Biological process | cholesterol metabolic process |
GO_0006783 | Biological process | heme biosynthetic process |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0000785 | Cellular component | chromatin |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0008289 | Molecular function | lipid binding |
Gene name | NFE2L1 |
Protein name | NFE2 like bZIP transcription factor 1 NFE2L1 protein Endoplasmic reticulum membrane sensor NFE2L1 (Locus control region-factor 1) (LCR-F1) (Nuclear factor erythroid 2-related factor 1) (NF-E2-related factor 1) (NFE2-related factor 1) (Nuclear factor, erythroid derived 2, like 1) (Protein NRF1, p120 form) (Transcription factor 11) (TCF-11) [Cleaved into: Transcription factor NRF1 (Protein NRF1, p110 form)] Endoplasmic reticulum membrane sensor NFE2L1 (Nuclear factor erythroid 2-related factor 1) (Nuclear factor, erythroid derived 2, like 1) |
Synonyms | TCF11 NRF1 HBZ17 |
Description | FUNCTION: [Endoplasmic reticulum membrane sensor NFE2L1]: Endoplasmic reticulum membrane sensor that translocates into the nucleus in response to various stresses to act as a transcription factor . Constitutes a precursor of the transcription factor NRF1 (By similarity). Able to detect various cellular stresses, such as cholesterol excess, oxidative stress or proteasome inhibition . In response to stress, it is released from the endoplasmic reticulum membrane following cleavage by the protease DDI2 and translocates into the nucleus to form the transcription factor NRF1 (By similarity). Acts as a key sensor of cholesterol excess: in excess cholesterol conditions, the endoplasmic reticulum membrane form of the protein directly binds cholesterol via its CRAC motif, preventing cleavage and release of the transcription factor NRF1, thereby allowing expression of genes promoting cholesterol removal, such as CD36 (By similarity). Involved in proteasome homeostasis: in response to proteasome inhibition, it is released from the endoplasmic reticulum membrane, translocates to the nucleus and activates expression of genes encoding proteasome subunits . .; FUNCTION: [Transcription factor NRF1]: CNC-type bZIP family transcription factor that translocates to the nucleus and regulates expression of target genes in response to various stresses . Heterodimerizes with small-Maf proteins (MAFF, MAFG or MAFK) and binds DNA motifs including the antioxidant response elements (AREs), which regulate expression of genes involved in oxidative stress response . Activates or represses expression of target genes, depending on the context . Plays a key role in cholesterol homeostasis by acting as a sensor of cholesterol excess: in low cholesterol conditions, translocates into the nucleus and represses expression of genes involved in defense against cholesterol excess, such as CD36 (By similarity). In excess cholesterol conditions, the endoplasmic reticulum membrane form of the protein directly binds cholesterol via its CRAC motif, preventing cleavage and release of the transcription factor NRF1, thereby allowing expression of genes promoting cholesterol removal (By similarity). Critical for redox balance in response to oxidative stress: acts by binding the AREs motifs on promoters and mediating activation of oxidative stress response genes, such as GCLC, GCLM, GSS, MT1 and MT2 (By similarity). Plays an essential role during fetal liver hematopoiesis: probably has a protective function against oxidative stress and is involved in lipid homeostasis in the liver (By similarity). Involved in proteasome homeostasis: in response to proteasome inhibition, mediates the 'bounce-back' of proteasome subunits by translocating into the nucleus and activating expression of genes encoding proteasome subunits . Also involved in regulating glucose flux (By similarity). Together with CEBPB; represses expression of DSPP during odontoblast differentiation . In response to ascorbic acid induction, activates expression of SP7/Osterix in osteoblasts. . |
Accessions | J3KTG6 ENST00000585062.1 J3QRG7 A3KMG6 ENST00000577431.1 J3KSE0 J3QLQ1 J3QQQ1 ENST00000584137.5 J3QQH8 J3QKY3 ENST00000361665.7 Q14494 ENST00000583210.5 ENST00000581319.1 ENST00000580037.1 ENST00000582155.5 ENST00000577411.5 J3KRF3 F5H1B7 J3KSR3 ENST00000579537.5 ENST00000585291.5 [Q14494-2] ENST00000357480.9 [Q14494-2] ENST00000362042.8 [Q14494-1] J3QR31 ENST00000579889.1 ENST00000583378.5 J3QQY8 J9JIE5 ENST00000536222.5 A0A0G2JLG9 ENST00000584634.5 B4DYE1 ENST00000580050.1 |