Insufficient scRNA-seq data for expression of HOXA4 at single-cell level.
Insufficient scRNA-seq data for expression of HOXA4 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 543.35 | 89 / 89 | 74% | 2.00 | 666 / 901 |
esophagus | 100% | 1220.35 | 1445 / 1445 | 73% | 1.99 | 133 / 183 |
adrenal gland | 100% | 374.62 | 258 / 258 | 30% | 0.47 | 68 / 230 |
intestine | 100% | 455.18 | 964 / 966 | 26% | 0.61 | 136 / 527 |
bladder | 100% | 326.24 | 21 / 21 | 22% | 0.34 | 111 / 504 |
skin | 94% | 168.24 | 1706 / 1809 | 23% | 0.39 | 108 / 472 |
uterus | 98% | 417.87 | 166 / 170 | 18% | 0.31 | 81 / 459 |
lung | 100% | 605.30 | 576 / 578 | 15% | 0.49 | 177 / 1155 |
stomach | 74% | 470.56 | 264 / 359 | 39% | 1.21 | 111 / 286 |
ovary | 67% | 224.44 | 120 / 180 | 38% | 2.77 | 165 / 430 |
breast | 100% | 448.82 | 458 / 459 | 3% | 0.05 | 39 / 1118 |
prostate | 99% | 262.59 | 242 / 245 | 4% | 0.05 | 21 / 502 |
muscle | 99% | 409.72 | 798 / 803 | 0% | 0 | 0 / 0 |
adipose | 99% | 421.54 | 1190 / 1204 | 0% | 0 | 0 / 0 |
spleen | 98% | 277.14 | 237 / 241 | 0% | 0 | 0 / 0 |
thymus | 84% | 151.38 | 547 / 653 | 8% | 0.23 | 46 / 605 |
blood vessel | 81% | 259.80 | 1083 / 1335 | 0% | 0 | 0 / 0 |
brain | 6% | 70.24 | 168 / 2642 | 16% | 0.50 | 116 / 705 |
pancreas | 10% | 12.17 | 33 / 328 | 7% | 0.12 | 13 / 178 |
heart | 12% | 15.07 | 101 / 861 | 0% | 0 | 0 / 0 |
liver | 4% | 4.69 | 8 / 226 | 1% | 0.01 | 4 / 406 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.07 | 1 / 29 |
tonsil | 0% | 0 | 0 / 0 | 2% | 0.02 | 1 / 45 |
peripheral blood | 0% | 0.34 | 2 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0048704 | Biological process | embryonic skeletal system morphogenesis |
GO_0009952 | Biological process | anterior/posterior pattern specification |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0009653 | Biological process | anatomical structure morphogenesis |
GO_0016604 | Cellular component | nuclear body |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000785 | Cellular component | chromatin |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | HOXA4 |
Protein name | Homeobox protein Hox-A4 (Homeobox protein Hox-1.4) (Homeobox protein Hox-1D) HOXA4 protein Homeobox A4 |
Synonyms | HOX1D |
Description | FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Binds to sites in the 5'-flanking sequence of its coding region with various affinities. The consensus sequences of the high and low affinity binding sites are 5'-TAATGA[CG]-3' and 5'-CTAATTTT-3'. |
Accessions | Q00056 ENST00000360046.10 ENST00000511914.1 ENST00000610970.1 A1L0T6 H0YHX3 |