Name | Number of supported studies | Average coverage | |
---|---|---|---|
brush cell | 3 studies | 26% ± 7% | |
goblet cell | 3 studies | 23% ± 6% | |
intestinal crypt stem cell | 3 studies | 19% ± 4% |
Insufficient scRNA-seq data for expression of HOXB9 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
intestine | 96% | 1686.56 | 927 / 966 | 87% | 141.10 | 458 / 527 |
uterus | 99% | 64.11 | 169 / 170 | 48% | 33.80 | 221 / 459 |
kidney | 100% | 1909.19 | 89 / 89 | 44% | 17.16 | 396 / 901 |
bladder | 90% | 51.76 | 19 / 21 | 44% | 45.93 | 224 / 504 |
breast | 97% | 64.00 | 447 / 459 | 8% | 2.64 | 95 / 1118 |
adrenal gland | 93% | 106.65 | 241 / 258 | 10% | 2.58 | 23 / 230 |
stomach | 25% | 8.98 | 89 / 359 | 74% | 83.48 | 213 / 286 |
prostate | 96% | 57.27 | 236 / 245 | 2% | 0.24 | 11 / 502 |
adipose | 93% | 48.06 | 1120 / 1204 | 0% | 0 | 0 / 0 |
skin | 54% | 11.49 | 983 / 1809 | 28% | 21.28 | 132 / 472 |
spleen | 55% | 9.86 | 133 / 241 | 0% | 0 | 0 / 0 |
esophagus | 3% | 0.89 | 46 / 1445 | 47% | 15.06 | 86 / 183 |
ovary | 22% | 6.29 | 40 / 180 | 26% | 10.62 | 110 / 430 |
pancreas | 1% | 0.10 | 3 / 328 | 44% | 10.50 | 78 / 178 |
lung | 9% | 1.34 | 53 / 578 | 28% | 14.13 | 325 / 1155 |
peripheral blood | 31% | 14.89 | 288 / 929 | 0% | 0 | 0 / 0 |
muscle | 26% | 4.34 | 205 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 20% | 3.62 | 270 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 16% | 3.31 | 7 / 45 |
thymus | 13% | 3.62 | 85 / 653 | 0% | 0.07 | 1 / 605 |
brain | 7% | 10.04 | 190 / 2642 | 1% | 0.95 | 6 / 705 |
liver | 0% | 0 | 0 / 226 | 4% | 1.27 | 18 / 406 |
heart | 2% | 0.31 | 16 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0048704 | Biological process | embryonic skeletal system morphogenesis |
GO_0030879 | Biological process | mammary gland development |
GO_0006351 | Biological process | DNA-templated transcription |
GO_0009954 | Biological process | proximal/distal pattern formation |
GO_0009952 | Biological process | anterior/posterior pattern specification |
GO_0060326 | Biological process | cell chemotaxis |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0090575 | Cellular component | RNA polymerase II transcription regulator complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | HOXB9 |
Protein name | Homeobox protein Hox-B9 (Homeobox protein Hox-2.5) (Homeobox protein Hox-2E) |
Synonyms | HOX2E |
Description | FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. |
Accessions | P17482 ENST00000311177.7 |