Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 9 studies | 35% ± 15% | |
basal cell | 8 studies | 38% ± 19% | |
type I pneumocyte | 5 studies | 31% ± 9% | |
type II pneumocyte | 5 studies | 32% ± 8% | |
epithelial cell | 4 studies | 51% ± 18% | |
respiratory goblet cell | 4 studies | 39% ± 17% | |
club cell | 4 studies | 31% ± 10% | |
goblet cell | 3 studies | 38% ± 19% | |
mucus secreting cell | 3 studies | 38% ± 13% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 4 studies | 21% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 92% | 4523.44 | 225 / 245 | 100% | 99.58 | 502 / 502 |
thymus | 100% | 1782.26 | 650 / 653 | 91% | 22.03 | 550 / 605 |
pancreas | 100% | 1403.13 | 327 / 328 | 80% | 19.02 | 143 / 178 |
stomach | 73% | 1213.96 | 263 / 359 | 93% | 26.57 | 265 / 286 |
lung | 67% | 725.56 | 390 / 578 | 96% | 38.56 | 1112 / 1155 |
breast | 58% | 1269.96 | 268 / 459 | 99% | 60.44 | 1109 / 1118 |
bladder | 43% | 1090.33 | 9 / 21 | 96% | 42.39 | 482 / 504 |
esophagus | 39% | 1748.13 | 558 / 1445 | 97% | 37.24 | 178 / 183 |
intestine | 40% | 627.43 | 389 / 966 | 95% | 29.65 | 503 / 527 |
tonsil | 0% | 0 | 0 / 0 | 100% | 52.01 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 59.08 | 1 / 1 |
ovary | 0% | 0 | 0 / 180 | 92% | 20.89 | 396 / 430 |
uterus | 7% | 107.01 | 12 / 170 | 85% | 39.72 | 390 / 459 |
kidney | 73% | 618.35 | 65 / 89 | 9% | 1.70 | 83 / 901 |
skin | 72% | 3852.20 | 1305 / 1809 | 2% | 0.49 | 10 / 472 |
liver | 0% | 0 | 0 / 226 | 8% | 2.29 | 34 / 406 |
adipose | 1% | 12.52 | 13 / 1204 | 0% | 0 | 0 / 0 |
muscle | 0% | 1.35 | 2 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 2.46 | 2 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0.84 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
adrenal gland | 0% | 0 | 0 / 258 | 0% | 0 | 0 / 230 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
brain | 0% | 0 | 0 / 2642 | 0% | 0 | 0 / 705 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
GO_0030216 | Biological process | keratinocyte differentiation |
GO_0061713 | Biological process | anterior neural tube closure |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0060672 | Biological process | epithelial cell morphogenesis involved in placental branching |
GO_0042733 | Biological process | embryonic digit morphogenesis |
GO_0003382 | Biological process | epithelial cell morphogenesis |
GO_0035264 | Biological process | multicellular organism growth |
GO_0007155 | Biological process | cell adhesion |
GO_0090132 | Biological process | epithelium migration |
GO_0003208 | Biological process | cardiac ventricle morphogenesis |
GO_0060463 | Biological process | lung lobe morphogenesis |
GO_0060324 | Biological process | face development |
GO_0070830 | Biological process | bicellular tight junction assembly |
GO_0051973 | Biological process | positive regulation of telomerase activity |
GO_0001843 | Biological process | neural tube closure |
GO_0034329 | Biological process | cell junction assembly |
GO_0048701 | Biological process | embryonic cranial skeleton morphogenesis |
GO_0007420 | Biological process | brain development |
GO_0043010 | Biological process | camera-type eye development |
GO_0021915 | Biological process | neural tube development |
GO_0060487 | Biological process | lung epithelial cell differentiation |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0016020 | Cellular component | membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005911 | Cellular component | cell-cell junction |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0140297 | Molecular function | DNA-binding transcription factor binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0043565 | Molecular function | sequence-specific DNA binding |
GO_0001161 | Molecular function | intronic transcription regulatory region sequence-specific DNA binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0001216 | Molecular function | DNA-binding transcription activator activity |
GO_0031490 | Molecular function | chromatin DNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | GRHL2 |
Protein name | Grainyhead-like protein 2 homolog (Brother of mammalian grainyhead) (Transcription factor CP2-like 3) |
Synonyms | BOM TFCP2L3 |
Description | FUNCTION: Transcription factor playing an important role in primary neurulation and in epithelial development . Binds directly to the consensus DNA sequence 5'-AACCGGTT-3' acting as an activator and repressor on distinct target genes (By similarity). During embryogenesis, plays unique and cooperative roles with GRHL3 in establishing distinct zones of primary neurulation. Essential for closure 3 (rostral end of the forebrain), functions cooperatively with GRHL3 in closure 2 (forebrain/midbrain boundary) and posterior neuropore closure (By similarity). Regulates epithelial morphogenesis acting as a target gene-associated transcriptional activator of apical junctional complex components. Up-regulates of CLDN3 and CLDN4, as well as of RAB25, which increases the CLDN4 protein and its localization at tight junctions (By similarity). Comprises an essential component of the transcriptional machinery that establishes appropriate expression levels of CLDN4 and CDH1 in different types of epithelia. Exhibits functional redundancy with GRHL3 in epidermal morphogenetic events and epidermal wound repair (By similarity). In lung, forms a regulatory loop with NKX2-1 that coordinates lung epithelial cell morphogenesis and differentiation (By similarity). In keratinocytes, plays a role in telomerase activation during cellular proliferation, regulates TERT expression by binding to TERT promoter region and inhibiting DNA methylation at the 5'-CpG island, possibly by interfering with DNMT1 enzyme activity . In addition, impairs keratinocyte differentiation and epidermal function by inhibiting the expression of genes clustered at the epidermal differentiation complex (EDC) as well as GRHL1 and GRHL3 through epigenetic mechanisms . . |
Accessions | ENST00000646743.1 [Q6ISB3-1] Q6ISB3 ENST00000395927.1 [Q6ISB3-2] |