Name | Number of supported studies | Average coverage | |
---|---|---|---|
pericyte | 4 studies | 24% ± 5% | |
connective tissue cell | 3 studies | 26% ± 8% | |
fibroblast | 3 studies | 29% ± 10% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 3 studies | 22% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
intestine | 100% | 1103.80 | 966 / 966 | 91% | 28.37 | 482 / 527 |
stomach | 87% | 385.90 | 312 / 359 | 81% | 17.20 | 233 / 286 |
adrenal gland | 100% | 327.85 | 257 / 258 | 65% | 22.18 | 150 / 230 |
kidney | 100% | 1418.90 | 89 / 89 | 59% | 7.68 | 531 / 901 |
bladder | 86% | 232.90 | 18 / 21 | 70% | 15.22 | 354 / 504 |
uterus | 95% | 217.40 | 162 / 170 | 57% | 16.79 | 263 / 459 |
lung | 100% | 518.08 | 576 / 578 | 52% | 7.29 | 601 / 1155 |
breast | 92% | 161.03 | 423 / 459 | 27% | 9.16 | 302 / 1118 |
pancreas | 20% | 16.90 | 67 / 328 | 87% | 15.15 | 154 / 178 |
ureter | 0% | 0 | 0 / 0 | 100% | 13.92 | 1 / 1 |
esophagus | 46% | 125.90 | 671 / 1445 | 53% | 10.04 | 97 / 183 |
spleen | 99% | 236.88 | 239 / 241 | 0% | 0 | 0 / 0 |
adipose | 86% | 235.28 | 1041 / 1204 | 0% | 0 | 0 / 0 |
skin | 47% | 50.51 | 850 / 1809 | 34% | 3.14 | 160 / 472 |
ovary | 7% | 10.09 | 13 / 180 | 60% | 19.61 | 259 / 430 |
prostate | 61% | 89.49 | 150 / 245 | 2% | 0.31 | 12 / 502 |
thymus | 36% | 32.86 | 237 / 653 | 1% | 0.07 | 7 / 605 |
blood vessel | 21% | 36.10 | 287 / 1335 | 0% | 0 | 0 / 0 |
liver | 9% | 7.40 | 21 / 226 | 9% | 0.97 | 35 / 406 |
brain | 6% | 49.12 | 162 / 2642 | 4% | 0.59 | 29 / 705 |
tonsil | 0% | 0 | 0 / 0 | 7% | 0.34 | 3 / 45 |
muscle | 1% | 0.62 | 7 / 803 | 0% | 0 | 0 / 0 |
heart | 0% | 0.42 | 4 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0.09 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0048704 | Biological process | embryonic skeletal system morphogenesis |
GO_0009952 | Biological process | anterior/posterior pattern specification |
GO_0045446 | Biological process | endothelial cell differentiation |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0009653 | Biological process | anatomical structure morphogenesis |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0001650 | Cellular component | fibrillar center |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | HOXB5 |
Protein name | Homeobox protein Hox-B5 (Homeobox protein HHO.C10) (Homeobox protein Hox-2A) (Homeobox protein Hu-1) |
Synonyms | HOX2A |
Description | FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. |
Accessions | ENST00000239151.6 P09067 |