Insufficient scRNA-seq data for expression of NOTO at single-cell level.
Insufficient scRNA-seq data for expression of NOTO at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
stomach | 67% | 2.84 | 241 / 359 | 1% | 0.02 | 4 / 286 |
intestine | 67% | 3.60 | 652 / 966 | 0% | 0.00 | 1 / 527 |
lung | 48% | 1.87 | 278 / 578 | 7% | 0.20 | 78 / 1155 |
adrenal gland | 38% | 1.64 | 97 / 258 | 13% | 0.36 | 30 / 230 |
bladder | 48% | 3.24 | 10 / 21 | 1% | 0.03 | 4 / 504 |
prostate | 48% | 1.86 | 118 / 245 | 0% | 0.00 | 1 / 502 |
brain | 46% | 1.92 | 1209 / 2642 | 0% | 0.00 | 1 / 705 |
ovary | 37% | 0.76 | 66 / 180 | 0% | 0 | 0 / 430 |
esophagus | 36% | 0.76 | 514 / 1445 | 1% | 0.01 | 2 / 183 |
uterus | 32% | 0.46 | 55 / 170 | 2% | 0.05 | 7 / 459 |
blood vessel | 32% | 0.68 | 433 / 1335 | 0% | 0 | 0 / 0 |
kidney | 28% | 0.47 | 25 / 89 | 0% | 0.00 | 1 / 901 |
breast | 26% | 0.81 | 120 / 459 | 1% | 0.03 | 12 / 1118 |
thymus | 25% | 0.49 | 165 / 653 | 1% | 0.01 | 4 / 605 |
adipose | 25% | 0.53 | 297 / 1204 | 0% | 0 | 0 / 0 |
spleen | 24% | 0.46 | 58 / 241 | 0% | 0 | 0 / 0 |
skin | 22% | 0.39 | 407 / 1809 | 0% | 0 | 0 / 472 |
liver | 19% | 0.32 | 43 / 226 | 0% | 0.02 | 2 / 406 |
heart | 17% | 0.26 | 148 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 17% | 0.22 | 158 / 929 | 0% | 0 | 0 / 0 |
muscle | 14% | 0.21 | 109 / 803 | 0% | 0 | 0 / 0 |
pancreas | 11% | 0.16 | 37 / 328 | 1% | 0.02 | 1 / 178 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030182 | Biological process | neuron differentiation |
GO_0009880 | Biological process | embryonic pattern specification |
GO_0007417 | Biological process | central nervous system development |
GO_0030903 | Biological process | notochord development |
GO_0044458 | Biological process | motile cilium assembly |
GO_1902017 | Biological process | regulation of cilium assembly |
GO_0001947 | Biological process | heart looping |
GO_0009953 | Biological process | dorsal/ventral pattern formation |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | NOTO |
Protein name | Homeobox protein notochord |
Synonyms | |
Description | FUNCTION: Transcription regulator acting downstream of both FOXA2 and Brachyury (T) during notochord development. Required for node morphogenesis. Is essential for cilia formation in the posterior notochord (PNC) and for left-right patterning; acts upstream of FOXJ1 and RFX3 in this process and is required for the expression of various components important for axonemal assembly and function. Plays a role in regulating axial versus paraxial cell fate. Activates the transcription of ciliary proteins C11orf97 homolog, FAM183B and SPACA9 in the embryonic ventral node (By similarity). . |
Accessions | ENST00000398468.4 A8MTQ0 |