Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| astrocyte | 6 studies | 44% ± 13% | |
| kidney loop of Henle epithelial cell | 4 studies | 20% ± 3% | |
| renal principal cell | 4 studies | 37% ± 5% | |
| kidney distal convoluted tubule epithelial cell | 3 studies | 31% ± 9% | |
| epithelial cell of proximal tubule | 3 studies | 35% ± 11% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| kidney | 5 studies | 22% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| kidney | 100% | 11680.03 | 89 / 89 | 94% | 43.47 | 849 / 901 |
| pancreas | 100% | 44.14 | 328 / 328 | 0% | 0 | 0 / 178 |
| brain | 57% | 63.87 | 1512 / 2642 | 2% | 0.84 | 11 / 705 |
| ovary | 24% | 36.58 | 43 / 180 | 31% | 22.08 | 133 / 430 |
| uterus | 39% | 226.75 | 66 / 170 | 11% | 4.05 | 52 / 459 |
| adrenal gland | 33% | 6.39 | 86 / 258 | 5% | 0.34 | 11 / 230 |
| liver | 35% | 7.52 | 78 / 226 | 2% | 0.51 | 9 / 406 |
| breast | 25% | 4.10 | 114 / 459 | 11% | 0.70 | 124 / 1118 |
| thymus | 32% | 11.78 | 206 / 653 | 1% | 0.30 | 8 / 605 |
| prostate | 32% | 39.81 | 79 / 245 | 0% | 0.01 | 1 / 502 |
| spleen | 7% | 0.68 | 16 / 241 | 0% | 0 | 0 / 0 |
| muscle | 7% | 0.71 | 53 / 803 | 0% | 0 | 0 / 0 |
| esophagus | 2% | 0.32 | 33 / 1445 | 2% | 0.22 | 4 / 183 |
| intestine | 4% | 0.35 | 34 / 966 | 1% | 0.08 | 5 / 527 |
| skin | 4% | 0.44 | 68 / 1809 | 0% | 0.01 | 1 / 472 |
| stomach | 2% | 0.18 | 7 / 359 | 2% | 0.11 | 5 / 286 |
| adipose | 3% | 0.47 | 41 / 1204 | 0% | 0 | 0 / 0 |
| lung | 2% | 0.15 | 9 / 578 | 1% | 0.20 | 15 / 1155 |
| peripheral blood | 3% | 0.28 | 25 / 929 | 0% | 0 | 0 / 0 |
| heart | 2% | 0.29 | 21 / 861 | 0% | 0 | 0 / 0 |
| blood vessel | 2% | 0.22 | 26 / 1335 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 1% | 0.05 | 1 / 80 |
| bladder | 0% | 0 | 0 / 21 | 0% | 0.03 | 1 / 504 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0043154 | Biological process | negative regulation of cysteine-type endopeptidase activity involved in apoptotic process |
| GO_0071300 | Biological process | cellular response to retinoic acid |
| GO_0007601 | Biological process | visual perception |
| GO_0060231 | Biological process | mesenchymal to epithelial transition |
| GO_0001658 | Biological process | branching involved in ureteric bud morphogenesis |
| GO_0071333 | Biological process | cellular response to glucose stimulus |
| GO_0061360 | Biological process | optic chiasma development |
| GO_0072162 | Biological process | metanephric mesenchymal cell differentiation |
| GO_0021650 | Biological process | vestibulocochlear nerve formation |
| GO_0001709 | Biological process | cell fate determination |
| GO_1900218 | Biological process | negative regulation of apoptotic process involved in metanephric nephron tubule development |
| GO_0001655 | Biological process | urogenital system development |
| GO_0071364 | Biological process | cellular response to epidermal growth factor stimulus |
| GO_0003406 | Biological process | retinal pigment epithelium development |
| GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
| GO_0002072 | Biological process | optic cup morphogenesis involved in camera-type eye development |
| GO_0072205 | Biological process | metanephric collecting duct development |
| GO_0010001 | Biological process | glial cell differentiation |
| GO_2000594 | Biological process | positive regulation of metanephric DCT cell differentiation |
| GO_0021633 | Biological process | optic nerve structural organization |
| GO_0072221 | Biological process | metanephric distal convoluted tubule development |
| GO_2000378 | Biological process | negative regulation of reactive oxygen species metabolic process |
| GO_0090103 | Biological process | cochlea morphogenesis |
| GO_0043069 | Biological process | negative regulation of programmed cell death |
| GO_2000597 | Biological process | positive regulation of optic nerve formation |
| GO_0072207 | Biological process | metanephric epithelium development |
| GO_0072300 | Biological process | positive regulation of metanephric glomerulus development |
| GO_0021631 | Biological process | optic nerve morphogenesis |
| GO_0021554 | Biological process | optic nerve development |
| GO_0007409 | Biological process | axonogenesis |
| GO_0072305 | Biological process | negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis |
| GO_0031667 | Biological process | response to nutrient levels |
| GO_0001823 | Biological process | mesonephros development |
| GO_0050679 | Biological process | positive regulation of epithelial cell proliferation |
| GO_0072108 | Biological process | positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis |
| GO_0072075 | Biological process | metanephric mesenchyme development |
| GO_0072307 | Biological process | regulation of metanephric nephron tubule epithelial cell differentiation |
| GO_0043066 | Biological process | negative regulation of apoptotic process |
| GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
| GO_0072289 | Biological process | metanephric nephron tubule formation |
| GO_0090102 | Biological process | cochlea development |
| GO_0035799 | Biological process | ureter maturation |
| GO_0048793 | Biological process | pronephros development |
| GO_0039003 | Biological process | pronephric field specification |
| GO_1900212 | Biological process | negative regulation of mesenchymal cell apoptotic process involved in metanephros development |
| GO_0035566 | Biological process | regulation of metanephros size |
| GO_0001843 | Biological process | neural tube closure |
| GO_0072189 | Biological process | ureter development |
| GO_1900215 | Biological process | negative regulation of apoptotic process involved in metanephric collecting duct development |
| GO_0042472 | Biological process | inner ear morphogenesis |
| GO_0048854 | Biological process | brain morphogenesis |
| GO_0072179 | Biological process | nephric duct formation |
| GO_0007501 | Biological process | mesodermal cell fate specification |
| GO_0043010 | Biological process | camera-type eye development |
| GO_0048856 | Biological process | anatomical structure development |
| GO_0048863 | Biological process | stem cell differentiation |
| GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
| GO_0003337 | Biological process | mesenchymal to epithelial transition involved in metanephros morphogenesis |
| GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
| GO_0032993 | Cellular component | protein-DNA complex |
| GO_0034451 | Cellular component | centriolar satellite |
| GO_0005815 | Cellular component | microtubule organizing center |
| GO_0032991 | Cellular component | protein-containing complex |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0000785 | Cellular component | chromatin |
| GO_0005634 | Cellular component | nucleus |
| GO_0008134 | Molecular function | transcription factor binding |
| GO_0003677 | Molecular function | DNA binding |
| GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO_0000987 | Molecular function | cis-regulatory region sequence-specific DNA binding |
| GO_0000976 | Molecular function | transcription cis-regulatory region binding |
| GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
| GO_0003700 | Molecular function | DNA-binding transcription factor activity |
| GO_0005515 | Molecular function | protein binding |
| Gene name | PAX2 |
| Protein name | Paired box 2 (Paired box gene 2, isoform CRA_g) Paired box protein Pax-2 Paired box transcription factor Paired box 2 (Paired box gene 2, isoform CRA_a) Paired box 2 |
| Synonyms | hCG_23001 |
| Description | FUNCTION: Transcription factor that may have a role in kidney cell differentiation . Has a critical role in the development of the urogenital tract, the eyes, and the CNS. . |
| Accessions | ENST00000707078.1 A0A7P0TAC9 ENST00000355243.8 [Q02962-3] A0A9L9PXU6 ENST00000428433.5 [Q02962-1] Q5SZP1 A0A0A0MRH7 ENST00000427256.6 ENST00000707079.1 ENST00000554172.2 ENST00000361791.7 G3V5S4 A0A9L9PYK3 Q6YFJ8 ENST00000679374.1 ENST00000370296.6 [Q02962-4] Q6YFJ7 Q02962 |
