Name | Number of supported studies | Average coverage | |
---|---|---|---|
GABAergic neuron | 3 studies | 39% ± 5% | |
astrocyte | 3 studies | 25% ± 6% | |
glutamatergic neuron | 3 studies | 41% ± 6% | |
oligodendrocyte precursor cell | 3 studies | 21% ± 4% | |
oligodendrocyte | 3 studies | 19% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 33% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 2920.30 | 245 / 245 | 100% | 9.82 | 502 / 502 |
brain | 100% | 4409.44 | 2641 / 2642 | 100% | 30.53 | 703 / 705 |
kidney | 100% | 1660.28 | 89 / 89 | 99% | 8.53 | 888 / 901 |
adrenal gland | 100% | 1108.96 | 257 / 258 | 99% | 9.34 | 227 / 230 |
thymus | 100% | 2677.60 | 653 / 653 | 95% | 7.35 | 575 / 605 |
breast | 100% | 2509.31 | 459 / 459 | 92% | 5.24 | 1027 / 1118 |
lung | 100% | 2162.60 | 577 / 578 | 85% | 4.17 | 987 / 1155 |
pancreas | 88% | 706.23 | 288 / 328 | 94% | 5.76 | 168 / 178 |
skin | 87% | 1553.02 | 1575 / 1809 | 93% | 5.63 | 440 / 472 |
ovary | 100% | 3953.46 | 180 / 180 | 76% | 3.36 | 326 / 430 |
uterus | 100% | 3634.84 | 170 / 170 | 70% | 3.69 | 321 / 459 |
esophagus | 94% | 1977.30 | 1352 / 1445 | 74% | 3.12 | 135 / 183 |
bladder | 100% | 2063.43 | 21 / 21 | 57% | 2.23 | 285 / 504 |
stomach | 98% | 1318.31 | 352 / 359 | 57% | 2.33 | 163 / 286 |
intestine | 99% | 2265.68 | 958 / 966 | 55% | 2.13 | 290 / 527 |
adipose | 100% | 2348.94 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 7.24 | 80 / 80 |
spleen | 100% | 2213.55 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2522.94 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 1694.18 | 801 / 803 | 0% | 0 | 0 / 0 |
liver | 63% | 404.49 | 143 / 226 | 35% | 1.34 | 141 / 406 |
heart | 95% | 895.82 | 814 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 76% | 2.86 | 34 / 45 |
lymph node | 0% | 0 | 0 / 0 | 72% | 3.56 | 21 / 29 |
peripheral blood | 41% | 302.14 | 385 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007420 | Biological process | brain development |
GO_0007517 | Biological process | muscle organ development |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0007507 | Biological process | heart development |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0001227 | Molecular function | DNA-binding transcription repressor activity, RNA polymerase II-specific |
GO_0043565 | Molecular function | sequence-specific DNA binding |
Gene name | POU6F1 |
Protein name | POU6F1 protein POU domain, class 6, transcription factor 1 (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5) (mPOU homeobox protein) POU class 6 homeobox 1 POU domain protein |
Synonyms | MPOU BRN5 TCFB1 |
Description | FUNCTION: Transcription factor that binds preferentially to a variant of the octamer motif (5'-ATGATAAT-3'). . |
Accessions | ENST00000636728.1 A0A1B0GU61 ENST00000333640.12 ENST00000552305.2 Q14863 A0A1C7CYV8 A0A1B0GVK9 A0A1C7CYY7 Q3B832 ENST00000550824.6 |