Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 5775.16 | 1445 / 1445 | 100% | 80.11 | 183 / 183 |
ovary | 100% | 5973.51 | 180 / 180 | 100% | 133.01 | 430 / 430 |
pancreas | 100% | 4020.45 | 328 / 328 | 100% | 55.62 | 178 / 178 |
thymus | 100% | 5864.90 | 653 / 653 | 100% | 58.71 | 604 / 605 |
uterus | 100% | 6089.23 | 170 / 170 | 100% | 66.57 | 458 / 459 |
stomach | 100% | 4861.46 | 359 / 359 | 100% | 75.95 | 285 / 286 |
skin | 100% | 5246.13 | 1808 / 1809 | 100% | 82.32 | 470 / 472 |
brain | 99% | 3337.35 | 2628 / 2642 | 100% | 45.86 | 705 / 705 |
prostate | 100% | 6433.11 | 245 / 245 | 99% | 59.55 | 499 / 502 |
kidney | 100% | 4910.28 | 89 / 89 | 99% | 43.28 | 895 / 901 |
intestine | 100% | 5951.93 | 966 / 966 | 99% | 74.12 | 523 / 527 |
lung | 100% | 6117.47 | 577 / 578 | 99% | 65.13 | 1144 / 1155 |
breast | 100% | 5911.15 | 459 / 459 | 99% | 64.02 | 1105 / 1118 |
liver | 100% | 2571.10 | 226 / 226 | 99% | 44.41 | 400 / 406 |
adrenal gland | 100% | 5607.41 | 258 / 258 | 98% | 55.88 | 226 / 230 |
bladder | 100% | 6242.05 | 21 / 21 | 98% | 70.49 | 495 / 504 |
adipose | 100% | 5599.85 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 111.83 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 67.17 | 29 / 29 |
muscle | 100% | 7008.91 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 5215.28 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 60.95 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 68.57 | 1 / 1 |
blood vessel | 100% | 6343.35 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 100% | 7519.32 | 860 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 3765.98 | 918 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_1903936 | Biological process | cellular response to sodium arsenite |
GO_0007584 | Biological process | response to nutrient |
GO_0033574 | Biological process | response to testosterone |
GO_0035865 | Biological process | cellular response to potassium ion |
GO_0006281 | Biological process | DNA repair |
GO_0045651 | Biological process | positive regulation of macrophage differentiation |
GO_1902512 | Biological process | positive regulation of apoptotic DNA fragmentation |
GO_2001033 | Biological process | negative regulation of double-strand break repair via nonhomologous end joining |
GO_0031333 | Biological process | negative regulation of protein-containing complex assembly |
GO_0071392 | Biological process | cellular response to estradiol stimulus |
GO_0014823 | Biological process | response to activity |
GO_0045931 | Biological process | positive regulation of mitotic cell cycle |
GO_0120162 | Biological process | positive regulation of cold-induced thermogenesis |
GO_0070301 | Biological process | cellular response to hydrogen peroxide |
GO_1990910 | Biological process | response to hypobaric hypoxia |
GO_1904385 | Biological process | cellular response to angiotensin |
GO_0071466 | Biological process | cellular response to xenobiotic stimulus |
GO_0006397 | Biological process | mRNA processing |
GO_0000165 | Biological process | MAPK cascade |
GO_0010629 | Biological process | negative regulation of gene expression |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0010628 | Biological process | positive regulation of gene expression |
GO_1990911 | Biological process | response to psychosocial stress |
GO_0071276 | Biological process | cellular response to cadmium ion |
GO_0071480 | Biological process | cellular response to gamma radiation |
GO_1900034 | Biological process | regulation of cellular response to heat |
GO_0071222 | Biological process | cellular response to lipopolysaccharide |
GO_0010667 | Biological process | negative regulation of cardiac muscle cell apoptotic process |
GO_0042531 | Biological process | positive regulation of tyrosine phosphorylation of STAT protein |
GO_0090084 | Biological process | negative regulation of inclusion body assembly |
GO_0034620 | Biological process | cellular response to unfolded protein |
GO_0051091 | Biological process | positive regulation of DNA-binding transcription factor activity |
GO_0051028 | Biological process | mRNA transport |
GO_1901652 | Biological process | response to peptide |
GO_0062029 | Biological process | positive regulation of stress granule assembly |
GO_0072738 | Biological process | cellular response to diamide |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0034605 | Biological process | cellular response to heat |
GO_1904843 | Biological process | cellular response to nitroglycerin |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_1904845 | Biological process | cellular response to L-glutamine |
GO_0065003 | Biological process | protein-containing complex assembly |
GO_0071280 | Biological process | cellular response to copper ion |
GO_0090261 | Biological process | positive regulation of inclusion body assembly |
GO_0006952 | Biological process | defense response |
GO_0016605 | Cellular component | PML body |
GO_0005634 | Cellular component | nucleus |
GO_0097431 | Cellular component | mitotic spindle pole |
GO_0005654 | Cellular component | nucleoplasm |
GO_1990904 | Cellular component | ribonucleoprotein complex |
GO_0097165 | Cellular component | nuclear stress granule |
GO_0000792 | Cellular component | heterochromatin |
GO_0005813 | Cellular component | centrosome |
GO_0000791 | Cellular component | euchromatin |
GO_0005737 | Cellular component | cytoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0000776 | Cellular component | kinetochore |
GO_0101031 | Cellular component | protein folding chaperone complex |
GO_0005829 | Cellular component | cytosol |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0051879 | Molecular function | Hsp90 protein binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0031490 | Molecular function | chromatin DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_1990841 | Molecular function | promoter-specific chromatin binding |
GO_0043565 | Molecular function | sequence-specific DNA binding |
GO_0140296 | Molecular function | general transcription initiation factor binding |
GO_0098847 | Molecular function | sequence-specific single stranded DNA binding |
GO_0000976 | Molecular function | transcription cis-regulatory region binding |
GO_0031072 | Molecular function | heat shock protein binding |
GO_0061770 | Molecular function | translation elongation factor binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0001162 | Molecular function | RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003677 | Molecular function | DNA binding |
GO_0001227 | Molecular function | DNA-binding transcription repressor activity, RNA polymerase II-specific |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0097677 | Molecular function | STAT family protein binding |
GO_0019901 | Molecular function | protein kinase binding |
Gene name | HSF1 |
Protein name | Heat shock factor protein 1 (HSF 1) (Heat shock transcription factor 1) (HSTF 1) Heat shock transcription factor 1 |
Synonyms | HSTF1 |
Description | FUNCTION: Functions as a stress-inducible and DNA-binding transcription factor that plays a central role in the transcriptional activation of the heat shock response (HSR), leading to the expression of a large class of molecular chaperones, heat shock proteins (HSPs), that protect cells from cellular insult damage . In unstressed cells, is present in a HSP90-containing multichaperone complex that maintains it in a non-DNA-binding inactivated monomeric form . Upon exposure to heat and other stress stimuli, undergoes homotrimerization and activates HSP gene transcription through binding to site-specific heat shock elements (HSEs) present in the promoter regions of HSP genes . Upon heat shock stress, forms a chromatin-associated complex with TTC5/STRAP and p300/EP300 to stimulate HSR transcription, therefore increasing cell survival . Activation is reversible, and during the attenuation and recovery phase period of the HSR, returns to its unactivated form . Binds to inverted 5'-NGAAN-3' pentamer DNA sequences . Binds to chromatin at heat shock gene promoters . Activates transcription of transcription factor FOXR1 which in turn activates transcription of the heat shock chaperones HSPA1A and HSPA6 and the antioxidant NADPH-dependent reductase DHRS2 . Also serves several other functions independently of its transcriptional activity. Involved in the repression of Ras-induced transcriptional activation of the c-fos gene in heat-stressed cells . Positively regulates pre-mRNA 3'-end processing and polyadenylation of HSP70 mRNA upon heat-stressed cells in a symplekin (SYMPK)-dependent manner . Plays a role in nuclear export of stress-induced HSP70 mRNA . Plays a role in the regulation of mitotic progression . Also plays a role as a negative regulator of non-homologous end joining (NHEJ) repair activity in a DNA damage-dependent manner . Involved in stress-induced cancer cell proliferation in a IER5-dependent manner . .; FUNCTION: (Microbial infection) Plays a role in latent human immunodeficiency virus (HIV-1) transcriptional reactivation. Binds to the HIV-1 long terminal repeat promoter (LTR) to reactivate viral transcription by recruiting cellular transcriptional elongation factors, such as CDK9, CCNT1 and EP300. . |
Accessions | E9PMQ6 A0A087WXG6 ENST00000528988.1 ENST00000530661.1 ENST00000646252.2 [Q00613-1] A0A087X1F9 E9PI02 A0A087WWQ3 Q00613 ENST00000533240.5 ENST00000534314.5 ENST00000528838.6 [Q00613-1] ENST00000400780.8 |