Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 5 studies | 24% ± 5% | |
epithelial cell | 4 studies | 22% ± 5% | |
GABAergic neuron | 3 studies | 28% ± 2% | |
glutamatergic neuron | 3 studies | 36% ± 3% | |
astrocyte | 3 studies | 26% ± 4% | |
oligodendrocyte | 3 studies | 23% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 30% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1710.64 | 1445 / 1445 | 100% | 20.54 | 183 / 183 |
lung | 100% | 1808.09 | 578 / 578 | 100% | 16.74 | 1155 / 1155 |
ovary | 100% | 2428.09 | 180 / 180 | 100% | 16.38 | 430 / 430 |
breast | 100% | 2602.35 | 459 / 459 | 100% | 22.36 | 1117 / 1118 |
brain | 100% | 1319.47 | 2635 / 2642 | 100% | 21.64 | 705 / 705 |
prostate | 100% | 1766.63 | 245 / 245 | 100% | 17.70 | 500 / 502 |
thymus | 100% | 2705.12 | 653 / 653 | 100% | 23.40 | 602 / 605 |
uterus | 100% | 2669.28 | 170 / 170 | 99% | 17.62 | 454 / 459 |
adrenal gland | 100% | 1870.65 | 258 / 258 | 99% | 14.53 | 227 / 230 |
bladder | 100% | 1866.57 | 21 / 21 | 99% | 15.94 | 497 / 504 |
pancreas | 99% | 969.35 | 325 / 328 | 98% | 14.47 | 175 / 178 |
stomach | 100% | 1365.88 | 359 / 359 | 97% | 15.91 | 277 / 286 |
kidney | 100% | 1247.69 | 89 / 89 | 97% | 16.77 | 870 / 901 |
liver | 100% | 1119.77 | 226 / 226 | 96% | 10.25 | 391 / 406 |
intestine | 100% | 1992.97 | 966 / 966 | 96% | 14.35 | 507 / 527 |
skin | 100% | 1859.44 | 1807 / 1809 | 93% | 16.43 | 440 / 472 |
blood vessel | 100% | 1946.08 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 19.72 | 29 / 29 |
spleen | 100% | 2229.54 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 15.61 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.13 | 1 / 1 |
adipose | 100% | 2689.09 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 1319.25 | 802 / 803 | 0% | 0 | 0 / 0 |
heart | 100% | 1201.63 | 857 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 78% | 8.85 | 62 / 80 |
peripheral blood | 73% | 1035.74 | 674 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030154 | Biological process | cell differentiation |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0001825 | Biological process | blastocyst formation |
GO_0045653 | Biological process | negative regulation of megakaryocyte differentiation |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0003682 | Molecular function | chromatin binding |
GO_0000976 | Molecular function | transcription cis-regulatory region binding |
Gene name | GABPA |
Protein name | GA binding protein transcription factor, alpha subunit 60kDa GA binding protein transcription factor alpha subunit 60kDa (GA binding protein transcription factor, alpha subunit 60kDa) (Nuclear respiratory factor 2 alpha subunit) GA-binding protein alpha chain (GABP subunit alpha) (Nuclear respiratory factor 2 subunit alpha) (Transcription factor E4TF1-60) |
Synonyms | E4TF1A hCG_401151 |
Description | FUNCTION: Transcription factor capable of interacting with purine rich repeats (GA repeats). Positively regulates transcription of transcriptional repressor RHIT/ZNF205 . .; FUNCTION: (Microbial infection) Necessary for the expression of the Adenovirus E4 gene. |
Accessions | A8IE48 Q8IYS3 ENST00000400075.4 ENST00000354828.7 Q06546 |