Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 3146.33 | 2640 / 2642 | 100% | 8.14 | 705 / 705 |
breast | 100% | 5536.25 | 459 / 459 | 100% | 10.39 | 1116 / 1118 |
prostate | 100% | 4129.85 | 245 / 245 | 100% | 6.93 | 501 / 502 |
thymus | 100% | 7279.99 | 653 / 653 | 100% | 11.24 | 602 / 605 |
lung | 100% | 5035.29 | 578 / 578 | 99% | 9.03 | 1149 / 1155 |
esophagus | 100% | 4525.89 | 1445 / 1445 | 99% | 8.37 | 182 / 183 |
ovary | 100% | 4966.48 | 180 / 180 | 99% | 6.63 | 426 / 430 |
uterus | 100% | 4426.34 | 170 / 170 | 99% | 8.77 | 453 / 459 |
skin | 100% | 5203.98 | 1809 / 1809 | 98% | 9.05 | 464 / 472 |
bladder | 100% | 5020.19 | 21 / 21 | 98% | 7.03 | 494 / 504 |
kidney | 100% | 3697.54 | 89 / 89 | 98% | 6.67 | 882 / 901 |
stomach | 100% | 3444.50 | 359 / 359 | 98% | 6.09 | 279 / 286 |
pancreas | 99% | 2200.19 | 325 / 328 | 98% | 6.27 | 175 / 178 |
intestine | 100% | 5114.46 | 966 / 966 | 97% | 5.85 | 509 / 527 |
adrenal gland | 100% | 5704.49 | 258 / 258 | 95% | 8.80 | 219 / 230 |
liver | 100% | 1587.62 | 225 / 226 | 85% | 3.67 | 347 / 406 |
adipose | 100% | 5630.42 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 5060.83 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 7.77 | 29 / 29 |
muscle | 100% | 2819.25 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4449.47 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 10.07 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.37 | 1 / 1 |
eye | 0% | 0 | 0 / 0 | 99% | 6.59 | 79 / 80 |
heart | 99% | 2805.20 | 850 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 95% | 2952.46 | 883 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0017015 | Biological process | regulation of transforming growth factor beta receptor signaling pathway |
GO_0030324 | Biological process | lung development |
GO_0008283 | Biological process | cell population proliferation |
GO_0003203 | Biological process | endocardial cushion morphogenesis |
GO_0023019 | Biological process | signal transduction involved in regulation of gene expression |
GO_0060395 | Biological process | SMAD protein signal transduction |
GO_0001707 | Biological process | mesoderm formation |
GO_0030513 | Biological process | positive regulation of BMP signaling pathway |
GO_0030073 | Biological process | insulin secretion |
GO_0048701 | Biological process | embryonic cranial skeleton morphogenesis |
GO_0001706 | Biological process | endoderm formation |
GO_0070723 | Biological process | response to cholesterol |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0001657 | Biological process | ureteric bud development |
GO_0071333 | Biological process | cellular response to glucose stimulus |
GO_0001701 | Biological process | in utero embryonic development |
GO_0010628 | Biological process | positive regulation of gene expression |
GO_0007369 | Biological process | gastrulation |
GO_0006351 | Biological process | DNA-templated transcription |
GO_0045165 | Biological process | cell fate commitment |
GO_0030325 | Biological process | adrenal gland development |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0048340 | Biological process | paraxial mesoderm morphogenesis |
GO_0009653 | Biological process | anatomical structure morphogenesis |
GO_0003184 | Biological process | pulmonary valve morphogenesis |
GO_0003140 | Biological process | determination of left/right asymmetry in lateral mesoderm |
GO_0048617 | Biological process | embryonic foregut morphogenesis |
GO_0035265 | Biological process | organ growth |
GO_0031016 | Biological process | pancreas development |
GO_0051098 | Biological process | regulation of binding |
GO_0003180 | Biological process | aortic valve morphogenesis |
GO_0071895 | Biological process | odontoblast differentiation |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0038092 | Biological process | nodal signaling pathway |
GO_0009952 | Biological process | anterior/posterior pattern specification |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0032924 | Biological process | activin receptor signaling pathway |
GO_0009791 | Biological process | post-embryonic development |
GO_0060039 | Biological process | pericardium development |
GO_0062009 | Biological process | secondary palate development |
GO_0035556 | Biological process | intracellular signal transduction |
GO_0030154 | Biological process | cell differentiation |
GO_0010718 | Biological process | positive regulation of epithelial to mesenchymal transition |
GO_0007352 | Biological process | zygotic specification of dorsal/ventral axis |
GO_0007179 | Biological process | transforming growth factor beta receptor signaling pathway |
GO_0031053 | Biological process | primary miRNA processing |
GO_0005634 | Cellular component | nucleus |
GO_0071141 | Cellular component | SMAD protein complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0071142 | Cellular component | homomeric SMAD protein complex |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005737 | Cellular component | cytoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005667 | Cellular component | transcription regulator complex |
GO_0005829 | Cellular component | cytosol |
GO_0032444 | Cellular component | activin responsive factor complex |
GO_0071144 | Cellular component | heteromeric SMAD protein complex |
GO_0140297 | Molecular function | DNA-binding transcription factor binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0042802 | Molecular function | identical protein binding |
GO_0031625 | Molecular function | ubiquitin protein ligase binding |
GO_0048156 | Molecular function | tau protein binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0003682 | Molecular function | chromatin binding |
GO_0003690 | Molecular function | double-stranded DNA binding |
GO_0070410 | Molecular function | co-SMAD binding |
GO_0061629 | Molecular function | RNA polymerase II-specific DNA-binding transcription factor binding |
GO_0019902 | Molecular function | phosphatase binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0000987 | Molecular function | cis-regulatory region sequence-specific DNA binding |
GO_0046332 | Molecular function | SMAD binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0003677 | Molecular function | DNA binding |
GO_0070412 | Molecular function | R-SMAD binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0034713 | Molecular function | type I transforming growth factor beta receptor binding |
GO_0070411 | Molecular function | I-SMAD binding |
GO_0005160 | Molecular function | transforming growth factor beta receptor binding |
GO_0097718 | Molecular function | disordered domain specific binding |
Gene name | SMAD2 |
Protein name | Mothers against decapentaplegic homolog (MAD homolog) (Mothers against DPP homolog) (SMAD family member) SMAD family member 2 Mothers against decapentaplegic homolog 2 (MAD homolog 2) (Mothers against DPP homolog 2) (JV18-1) (Mad-related protein 2) (hMAD-2) (SMAD family member 2) (SMAD 2) (Smad2) (hSMAD2) |
Synonyms | hCG_22544 MADR2 MADH2 |
Description | FUNCTION: Receptor-regulated SMAD (R-SMAD) that is an intracellular signal transducer and transcriptional modulator activated by TGF-beta (transforming growth factor) and activin type 1 receptor kinases. Binds the TRE element in the promoter region of many genes that are regulated by TGF-beta and, on formation of the SMAD2/SMAD4 complex, activates transcription. Promotes TGFB1-mediated transcription of odontoblastic differentiation genes in dental papilla cells (By similarity). Positively regulates PDPK1 kinase activity by stimulating its dissociation from the 14-3-3 protein YWHAQ which acts as a negative regulator. May act as a tumor suppressor in colorectal carcinoma . . |
Accessions | ENST00000262160.11 [Q15796-1] ENST00000591214.5 ENST00000586514.5 Q53XR6 ENST00000587269.5 ENST00000587421.5 K7EL92 ENST00000585978.1 K7ESI8 ENST00000586040.5 [Q15796-2] K7EJX0 ENST00000356825.8 [Q15796-2] K7ERC7 ENST00000589877.5 ENST00000402690.6 [Q15796-1] Q15796 B7Z5N5 |