Insufficient scRNA-seq data for expression of MSGN1 at single-cell level.
Insufficient scRNA-seq data for expression of MSGN1 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 34% | 2.23 | 490 / 1445 | 7% | 0.12 | 13 / 183 |
prostate | 24% | 0.62 | 59 / 245 | 0% | 0 | 0 / 502 |
lung | 10% | 0.21 | 55 / 578 | 9% | 0.85 | 102 / 1155 |
skin | 14% | 0.28 | 252 / 1809 | 0% | 0 | 0 / 472 |
intestine | 13% | 0.38 | 128 / 966 | 0% | 0.01 | 2 / 527 |
uterus | 5% | 0.14 | 8 / 170 | 7% | 0.31 | 33 / 459 |
spleen | 10% | 0.17 | 25 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 10% | 0.30 | 3 / 29 |
brain | 9% | 0.18 | 245 / 2642 | 0% | 0.01 | 1 / 705 |
tonsil | 0% | 0 | 0 / 0 | 7% | 0.17 | 3 / 45 |
muscle | 6% | 0.12 | 49 / 803 | 0% | 0 | 0 / 0 |
bladder | 5% | 0.10 | 1 / 21 | 1% | 0.05 | 6 / 504 |
peripheral blood | 6% | 0.14 | 53 / 929 | 0% | 0 | 0 / 0 |
breast | 5% | 0.09 | 23 / 459 | 0% | 0.01 | 3 / 1118 |
heart | 5% | 0.11 | 42 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 3% | 0.05 | 41 / 1335 | 0% | 0 | 0 / 0 |
ovary | 3% | 0.04 | 5 / 180 | 0% | 0 | 0 / 430 |
adrenal gland | 2% | 0.03 | 6 / 258 | 0% | 0.01 | 1 / 230 |
liver | 3% | 0.05 | 6 / 226 | 0% | 0 | 0 / 406 |
kidney | 2% | 0.04 | 2 / 89 | 0% | 0.01 | 2 / 901 |
thymus | 2% | 0.04 | 15 / 653 | 0% | 0 | 0 / 605 |
adipose | 2% | 0.03 | 21 / 1204 | 0% | 0 | 0 / 0 |
stomach | 1% | 0.02 | 5 / 359 | 0% | 0 | 0 / 286 |
pancreas | 1% | 0.02 | 4 / 328 | 0% | 0 | 0 / 178 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0001707 | Biological process | mesoderm formation |
GO_0030154 | Biological process | cell differentiation |
GO_0007379 | Biological process | segment specification |
GO_0001756 | Biological process | somitogenesis |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0046983 | Molecular function | protein dimerization activity |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0003682 | Molecular function | chromatin binding |
Gene name | MSGN1 |
Protein name | Mesogenin-1 (Paraxial mesoderm-specific mesogenin1) (pMesogenin1) (pMsgn1) |
Synonyms | |
Description | FUNCTION: Involved in specifying the paraxial, but not dorsal, mesoderm. May regulate the expression of T-box transcription factors required for mesoderm formation and differentiation (By similarity). . |
Accessions | A6NI15 ENST00000281047.4 |