Insufficient scRNA-seq data for expression of HOXA6 at single-cell level.
Insufficient scRNA-seq data for expression of HOXA6 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 129.51 | 89 / 89 | 81% | 3.03 | 730 / 901 |
intestine | 99% | 160.10 | 960 / 966 | 72% | 3.31 | 381 / 527 |
prostate | 98% | 87.60 | 241 / 245 | 71% | 2.17 | 354 / 502 |
adrenal gland | 99% | 106.49 | 256 / 258 | 70% | 3.16 | 160 / 230 |
uterus | 100% | 204.91 | 170 / 170 | 63% | 2.47 | 288 / 459 |
bladder | 95% | 100.52 | 20 / 21 | 62% | 2.34 | 313 / 504 |
skin | 98% | 68.04 | 1776 / 1809 | 53% | 1.83 | 252 / 472 |
lung | 90% | 43.50 | 520 / 578 | 45% | 1.03 | 517 / 1155 |
breast | 99% | 89.87 | 456 / 459 | 27% | 0.76 | 298 / 1118 |
stomach | 57% | 39.30 | 204 / 359 | 65% | 2.55 | 187 / 286 |
adipose | 97% | 61.43 | 1171 / 1204 | 0% | 0 | 0 / 0 |
esophagus | 24% | 7.89 | 340 / 1445 | 69% | 2.15 | 126 / 183 |
muscle | 89% | 30.99 | 716 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 61% | 35.99 | 817 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 51% | 1.18 | 23 / 45 |
ovary | 19% | 6.58 | 34 / 180 | 22% | 0.89 | 95 / 430 |
brain | 5% | 2.11 | 130 / 2642 | 24% | 0.99 | 167 / 705 |
spleen | 25% | 5.18 | 60 / 241 | 0% | 0 | 0 / 0 |
pancreas | 0% | 0.09 | 1 / 328 | 24% | 0.57 | 42 / 178 |
lymph node | 0% | 0 | 0 / 0 | 21% | 0.36 | 6 / 29 |
thymus | 9% | 1.56 | 59 / 653 | 1% | 0.07 | 6 / 605 |
liver | 0% | 0 | 0 / 226 | 5% | 0.08 | 20 / 406 |
peripheral blood | 0% | 0.03 | 2 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0048706 | Biological process | embryonic skeletal system development |
GO_0009952 | Biological process | anterior/posterior pattern specification |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0016607 | Cellular component | nuclear speck |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000785 | Cellular component | chromatin |
GO_0005634 | Cellular component | nucleus |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
Gene name | HOXA6 |
Protein name | Homeobox protein Hox-A6 (Homeobox protein Hox-1B) |
Synonyms | HOX1B |
Description | FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. |
Accessions | P31267 ENST00000222728.3 |