HDX report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
interneuron	6 studies	33% ± 22%	Explore
GABAergic neuron	5 studies	43% ± 18%	Explore
glutamatergic neuron	4 studies	51% ± 20%	Explore
oligodendrocyte precursor cell	4 studies	24% ± 7%	Explore
endothelial cell	3 studies	26% ± 12%	Explore
microglial cell	3 studies	17% ± 3%	Explore
neuron	3 studies	22% ± 4%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	6 studies	34% ± 17%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	99%	274.27	2614 / 2642	98%	3.24	691 / 705
adrenal gland	100%	268.99	258 / 258	87%	2.41	199 / 230
ovary	100%	377.58	180 / 180	85%	1.80	364 / 430
prostate	100%	298.87	245 / 245	84%	1.73	424 / 502
thymus	100%	309.86	652 / 653	84%	1.95	507 / 605
breast	100%	292.97	459 / 459	83%	2.17	932 / 1118
kidney	100%	197.11	89 / 89	75%	1.70	678 / 901
skin	85%	158.06	1535 / 1809	70%	1.71	332 / 472
lung	99%	238.28	574 / 578	52%	1.12	598 / 1155
bladder	100%	300.90	21 / 21	47%	0.97	237 / 504
pancreas	60%	53.84	196 / 328	75%	1.31	133 / 178
uterus	100%	409.92	170 / 170	33%	0.80	150 / 459
intestine	99%	236.76	959 / 966	27%	0.44	142 / 527
liver	88%	100.92	199 / 226	27%	0.51	109 / 406
esophagus	93%	199.13	1351 / 1445	17%	0.28	32 / 183
blood vessel	100%	553.12	1335 / 1335	0%	0	0 / 0
spleen	100%	193.47	241 / 241	0%	0	0 / 0
adipose	100%	291.64	1203 / 1204	0%	0	0 / 0
stomach	73%	129.85	261 / 359	27%	0.46	77 / 286
heart	93%	143.05	799 / 861	0%	0	0 / 0
muscle	40%	28.95	321 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	35%	0.54	28 / 80
peripheral blood	24%	56.30	219 / 929	0%	0	0 / 0
lymph node	0%	0	0 / 0	10%	0.19	3 / 29
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1