Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 3 studies | 21% ± 4% |
Insufficient scRNA-seq data for expression of SNAPC4 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1332.68 | 1445 / 1445 | 100% | 18.82 | 183 / 183 |
ovary | 100% | 1943.23 | 180 / 180 | 100% | 18.51 | 430 / 430 |
pancreas | 100% | 1589.03 | 328 / 328 | 100% | 13.57 | 178 / 178 |
uterus | 100% | 1962.70 | 170 / 170 | 100% | 16.38 | 458 / 459 |
intestine | 100% | 1632.67 | 966 / 966 | 100% | 16.75 | 525 / 527 |
skin | 100% | 1868.22 | 1809 / 1809 | 99% | 16.14 | 469 / 472 |
thymus | 100% | 2398.78 | 653 / 653 | 99% | 14.46 | 601 / 605 |
stomach | 100% | 1204.16 | 359 / 359 | 99% | 15.98 | 284 / 286 |
prostate | 100% | 2196.88 | 245 / 245 | 99% | 18.13 | 498 / 502 |
bladder | 100% | 1714.38 | 21 / 21 | 99% | 15.63 | 499 / 504 |
breast | 100% | 1803.78 | 459 / 459 | 99% | 15.27 | 1105 / 1118 |
brain | 98% | 1951.78 | 2590 / 2642 | 100% | 20.09 | 702 / 705 |
lung | 100% | 1735.82 | 577 / 578 | 98% | 13.35 | 1129 / 1155 |
kidney | 100% | 1709.46 | 89 / 89 | 97% | 9.65 | 877 / 901 |
liver | 100% | 1425.23 | 226 / 226 | 97% | 9.62 | 394 / 406 |
adrenal gland | 100% | 1266.61 | 257 / 258 | 96% | 10.35 | 221 / 230 |
adipose | 100% | 1499.06 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 16.33 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 27.57 | 29 / 29 |
spleen | 100% | 2571.47 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 15.11 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 15.51 | 1 / 1 |
blood vessel | 100% | 1215.83 | 1332 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 907.30 | 793 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 843.85 | 835 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 91% | 1187.03 | 843 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0042796 | Biological process | snRNA transcription by RNA polymerase III |
GO_0042795 | Biological process | snRNA transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0019185 | Cellular component | snRNA-activating protein complex |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0016251 | Molecular function | RNA polymerase II general transcription initiation factor activity |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_0000995 | Molecular function | RNA polymerase III general transcription initiation factor activity |
GO_0001006 | Molecular function | RNA polymerase III type 3 promoter sequence-specific DNA binding |
Gene name | SNAPC4 |
Protein name | snRNA-activating protein complex subunit 4 (SNAPc subunit 4) (Proximal sequence element-binding transcription factor subunit alpha) (PSE-binding factor subunit alpha) (PTF subunit alpha) (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit) Small nuclear RNA activating complex polypeptide 4 snRNA-activating protein complex subunit 4 |
Synonyms | SNAP190 |
Description | FUNCTION: Part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. Binds to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Recruits TBP and BRF2 to the U6 snRNA TATA box. . |
Accessions | ENST00000637388 ENST00000298532.2 Q5SXM2 ENST00000637388.2 A0A1B0GUB4 A0A8I5QKS3 ENST00000689006.1 ENST00000684778.1 |