HOXB1 | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of HOXB1 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
kidney	99%	19.87	88 / 89	2%	0.03	14 / 901
ureter	0%	0	0 / 0	100%	1.41	1 / 1
skin	66%	11.72	1194 / 1809	0%	0	0 / 472
esophagus	43%	14.88	626 / 1445	12%	0.24	22 / 183
bladder	38%	4.38	8 / 21	10%	0.22	48 / 504
intestine	43%	3.27	419 / 966	2%	0.06	9 / 527
uterus	21%	2.30	36 / 170	17%	0.39	76 / 459
breast	28%	2.11	128 / 459	9%	0.19	101 / 1118
lung	25%	1.81	146 / 578	4%	0.12	44 / 1155
prostate	22%	2.49	53 / 245	0%	0	0 / 502
stomach	8%	0.44	29 / 359	1%	0.01	3 / 286
tonsil	0%	0	0 / 0	9%	0.18	4 / 45
adipose	5%	0.28	66 / 1204	0%	0	0 / 0
spleen	5%	0.32	11 / 241	0%	0	0 / 0
pancreas	2%	0.12	5 / 328	2%	0.04	4 / 178
adrenal gland	3%	0.16	9 / 258	0%	0	0 / 230
blood vessel	3%	0.15	43 / 1335	0%	0	0 / 0
ovary	1%	0.03	1 / 180	2%	0.29	10 / 430
muscle	2%	0.12	17 / 803	0%	0	0 / 0
peripheral blood	2%	0.13	19 / 929	0%	0	0 / 0
brain	1%	0.16	28 / 2642	0%	0.00	1 / 705
thymus	1%	0.06	7 / 653	0%	0	0 / 605
heart	1%	0.04	8 / 861	0%	0	0 / 0
liver	1%	0.04	2 / 226	0%	0	0 / 406
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0045944	Biological process	positive regulation of transcription by RNA polymerase II
GO_0021571	Biological process	rhombomere 5 development
GO_0006357	Biological process	regulation of transcription by RNA polymerase II
GO_0048704	Biological process	embryonic skeletal system morphogenesis
GO_0021612	Biological process	facial nerve structural organization
GO_0021570	Biological process	rhombomere 4 development
GO_0021754	Biological process	facial nucleus development
GO_0048646	Biological process	anatomical structure formation involved in morphogenesis
GO_0006355	Biological process	regulation of DNA-templated transcription
GO_0009952	Biological process	anterior/posterior pattern specification
GO_0007389	Biological process	pattern specification process
GO_0005654	Cellular component	nucleoplasm
GO_0000785	Cellular component	chromatin
GO_0005634	Cellular component	nucleus
GO_0003677	Molecular function	DNA binding
GO_0000978	Molecular function	RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO_0001228	Molecular function	DNA-binding transcription activator activity, RNA polymerase II-specific
GO_0000977	Molecular function	RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO_0019904	Molecular function	protein domain specific binding
GO_0000981	Molecular function	DNA-binding transcription factor activity, RNA polymerase II-specific
GO_1990837	Molecular function	sequence-specific double-stranded DNA binding

Gene name	HOXB1
Protein name	Homeobox protein Hox-B1 (Homeobox protein Hox-2I) Homeobox protein Hox-B1 HOXB1 protein
Synonyms	HOX2I
Description	FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Acts on the anterior body structures. FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Acts on the anterior body structures. .
Accessions	Q4VB01 ENST00000239174.7 [P14653-1] P14653 Q9HB13 ENST00000577092.1 [P14653-2]

HOXB1 report