Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 32 studies | 44% ± 21% | |
fibroblast | 28 studies | 38% ± 16% | |
macrophage | 27 studies | 39% ± 15% | |
classical monocyte | 27 studies | 44% ± 19% | |
conventional dendritic cell | 24 studies | 45% ± 20% | |
non-classical monocyte | 24 studies | 46% ± 17% | |
endothelial cell of lymphatic vessel | 22 studies | 47% ± 19% | |
monocyte | 18 studies | 34% ± 16% | |
basal cell | 18 studies | 34% ± 16% | |
dendritic cell | 17 studies | 46% ± 18% | |
capillary endothelial cell | 15 studies | 38% ± 15% | |
smooth muscle cell | 14 studies | 24% ± 9% | |
epithelial cell | 14 studies | 36% ± 17% | |
endothelial cell of artery | 12 studies | 46% ± 17% | |
connective tissue cell | 11 studies | 40% ± 15% | |
endothelial cell of vascular tree | 11 studies | 40% ± 13% | |
vein endothelial cell | 11 studies | 42% ± 13% | |
pericyte | 10 studies | 38% ± 18% | |
goblet cell | 10 studies | 56% ± 18% | |
plasmacytoid dendritic cell | 9 studies | 30% ± 10% | |
myeloid cell | 9 studies | 44% ± 17% | |
secretory cell | 7 studies | 25% ± 7% | |
alveolar macrophage | 6 studies | 45% ± 19% | |
myofibroblast cell | 6 studies | 31% ± 17% | |
mononuclear phagocyte | 5 studies | 43% ± 11% | |
mesothelial cell | 5 studies | 35% ± 14% | |
intermediate monocyte | 5 studies | 50% ± 18% | |
respiratory goblet cell | 4 studies | 32% ± 6% | |
glomerular endothelial cell | 4 studies | 40% ± 12% | |
ciliated cell | 4 studies | 34% ± 22% | |
adventitial cell | 4 studies | 43% ± 15% | |
brush cell | 4 studies | 30% ± 11% | |
leukocyte | 4 studies | 27% ± 7% | |
mast cell | 4 studies | 23% ± 7% | |
keratinocyte | 4 studies | 49% ± 22% | |
club cell | 3 studies | 28% ± 11% | |
squamous epithelial cell | 3 studies | 50% ± 19% | |
monocyte-derived dendritic cell | 3 studies | 56% ± 30% | |
transit amplifying cell | 3 studies | 36% ± 11% | |
lymphocyte | 3 studies | 35% ± 19% | |
tissue-resident macrophage | 3 studies | 44% ± 21% | |
naive B cell | 3 studies | 19% ± 3% | |
luminal hormone-sensing cell of mammary gland | 3 studies | 27% ± 9% | |
progenitor cell of mammary luminal epithelium | 3 studies | 32% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 94% | 7923.32 | 1364 / 1445 | 99% | 128.80 | 181 / 183 |
lung | 98% | 12981.62 | 567 / 578 | 87% | 52.97 | 1006 / 1155 |
stomach | 86% | 6017.97 | 307 / 359 | 98% | 66.45 | 280 / 286 |
intestine | 84% | 7836.85 | 812 / 966 | 97% | 77.16 | 509 / 527 |
breast | 98% | 10648.43 | 452 / 459 | 78% | 28.50 | 877 / 1118 |
bladder | 86% | 4891.33 | 18 / 21 | 85% | 43.63 | 426 / 504 |
uterus | 82% | 4748.50 | 140 / 170 | 85% | 61.80 | 391 / 459 |
prostate | 65% | 2601.35 | 160 / 245 | 97% | 49.67 | 487 / 502 |
thymus | 75% | 3624.58 | 490 / 653 | 83% | 34.85 | 500 / 605 |
skin | 84% | 36988.60 | 1526 / 1809 | 53% | 14.66 | 249 / 472 |
ovary | 88% | 6656.96 | 159 / 180 | 46% | 10.81 | 196 / 430 |
adipose | 100% | 14657.22 | 1198 / 1204 | 0% | 0 | 0 / 0 |
kidney | 22% | 863.51 | 20 / 89 | 77% | 29.70 | 693 / 901 |
tonsil | 0% | 0 | 0 / 0 | 98% | 150.30 | 44 / 45 |
spleen | 97% | 5555.17 | 233 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 96% | 8089.48 | 1277 / 1335 | 0% | 0 | 0 / 0 |
pancreas | 1% | 20.70 | 2 / 328 | 94% | 56.93 | 167 / 178 |
heart | 77% | 4449.29 | 663 / 861 | 0% | 0 | 0 / 0 |
adrenal gland | 34% | 1700.82 | 88 / 258 | 41% | 12.12 | 95 / 230 |
brain | 6% | 181.39 | 156 / 2642 | 37% | 6.80 | 258 / 705 |
muscle | 31% | 1030.31 | 248 / 803 | 0% | 0 | 0 / 0 |
liver | 2% | 88.28 | 4 / 226 | 28% | 7.03 | 115 / 406 |
eye | 0% | 0 | 0 / 0 | 15% | 2.68 | 12 / 80 |
lymph node | 0% | 0 | 0 / 0 | 10% | 1.27 | 3 / 29 |
peripheral blood | 6% | 203.58 | 56 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0043154 | Biological process | negative regulation of cysteine-type endopeptidase activity involved in apoptotic process |
GO_0071300 | Biological process | cellular response to retinoic acid |
GO_0090051 | Biological process | negative regulation of cell migration involved in sprouting angiogenesis |
GO_1901653 | Biological process | cellular response to peptide |
GO_0006366 | Biological process | transcription by RNA polymerase II |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0048730 | Biological process | epidermis morphogenesis |
GO_0051247 | Biological process | positive regulation of protein metabolic process |
GO_0120222 | Biological process | regulation of blastocyst development |
GO_0061436 | Biological process | establishment of skin barrier |
GO_0010629 | Biological process | negative regulation of gene expression |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0010628 | Biological process | positive regulation of gene expression |
GO_1990830 | Biological process | cellular response to leukemia inhibitory factor |
GO_1903672 | Biological process | positive regulation of sprouting angiogenesis |
GO_0009913 | Biological process | epidermal cell differentiation |
GO_2000342 | Biological process | negative regulation of chemokine (C-X-C motif) ligand 2 production |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0071363 | Biological process | cellular response to growth factor stimulus |
GO_0071409 | Biological process | cellular response to cycloheximide |
GO_0032088 | Biological process | negative regulation of NF-kappaB transcription factor activity |
GO_0060070 | Biological process | canonical Wnt signaling pathway |
GO_0048679 | Biological process | regulation of axon regeneration |
GO_0060761 | Biological process | negative regulation of response to cytokine stimulus |
GO_0016525 | Biological process | negative regulation of angiogenesis |
GO_0034115 | Biological process | negative regulation of heterotypic cell-cell adhesion |
GO_1904998 | Biological process | negative regulation of leukocyte adhesion to arterial endothelial cell |
GO_0035166 | Biological process | post-embryonic hemopoiesis |
GO_0050728 | Biological process | negative regulation of inflammatory response |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0045595 | Biological process | regulation of cell differentiation |
GO_0002067 | Biological process | glandular epithelial cell differentiation |
GO_0019827 | Biological process | stem cell population maintenance |
GO_0007500 | Biological process | mesodermal cell fate determination |
GO_0045429 | Biological process | positive regulation of nitric oxide biosynthetic process |
GO_0048662 | Biological process | negative regulation of smooth muscle cell proliferation |
GO_0032717 | Biological process | negative regulation of interleukin-8 production |
GO_0051973 | Biological process | positive regulation of telomerase activity |
GO_1902895 | Biological process | positive regulation of miRNA transcription |
GO_0002357 | Biological process | defense response to tumor cell |
GO_2000134 | Biological process | negative regulation of G1/S transition of mitotic cell cycle |
GO_0071499 | Biological process | cellular response to laminar fluid shear stress |
GO_0046985 | Biological process | positive regulation of hemoglobin biosynthetic process |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0070301 | Biological process | cellular response to hydrogen peroxide |
GO_0045444 | Biological process | fat cell differentiation |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0035019 | Biological process | somatic stem cell population maintenance |
GO_0031077 | Biological process | post-embryonic camera-type eye development |
GO_0000791 | Cellular component | euchromatin |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0015630 | Cellular component | microtubule cytoskeleton |
GO_0000785 | Cellular component | chromatin |
GO_0005667 | Cellular component | transcription regulator complex |
GO_0000978 | Molecular function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
GO_1990841 | Molecular function | promoter-specific chromatin binding |
GO_0001228 | Molecular function | DNA-binding transcription activator activity, RNA polymerase II-specific |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0000976 | Molecular function | transcription cis-regulatory region binding |
GO_0001221 | Molecular function | transcription coregulator binding |
GO_1990837 | Molecular function | sequence-specific double-stranded DNA binding |
GO_0008013 | Molecular function | beta-catenin binding |
GO_0061629 | Molecular function | RNA polymerase II-specific DNA-binding transcription factor binding |
GO_0042826 | Molecular function | histone deacetylase binding |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0008270 | Molecular function | zinc ion binding |
GO_0031490 | Molecular function | chromatin DNA binding |
GO_0001010 | Molecular function | RNA polymerase II sequence-specific DNA-binding transcription factor recruiting activity |
GO_0005515 | Molecular function | protein binding |
Gene name | KLF4 |
Protein name | Kruppel-like factor 4 short isoform Kruppel-like factor 4 (Gut) KLF transcription factor 4 Krueppel-like factor 4 (Epithelial zinc finger protein EZF) (Gut-enriched krueppel-like factor) |
Synonyms | EZF GKLF |
Description | FUNCTION: Transcription factor; can act both as activator and as repressor. Binds the 5'-CACCC-3' core sequence. Binds to the promoter region of its own gene and can activate its own transcription. Regulates the expression of key transcription factors during embryonic development. Plays an important role in maintaining embryonic stem cells, and in preventing their differentiation. Required for establishing the barrier function of the skin and for postnatal maturation and maintenance of the ocular surface. Involved in the differentiation of epithelial cells and may also function in skeletal and kidney development. Contributes to the down-regulation of p53/TP53 transcription. . |
Accessions | B7ZBT2 ENST00000610832.1 ENST00000374672.5 [O43474-1] L0R3V2 F2VTX5 ENST00000420475.1 O43474 A0A087X0S4 |